hmmer-3.0-2-rosa2012.1.i586.rpm


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Description

hmmer - Profile HMMs for protein sequence analysis

Property Value
Distribution ROSA 2012.1
Repository ROSA Contrib i586
Package name hmmer
Package version 3.0
Package release 2-rosa2012.1
Package architecture i586
Package type rpm
Installed size 8.33 MB
Download size 1.29 MB
Official Mirror mirror.rosalab.ru
Profile hidden Markov models (profile HMMs) can be used to do sensitive
database searching using statistical descriptions of a sequence family's
consensus. HMMER is a freely distributable implementation of profile HMM
software for protein sequence analysis.

Alternatives

Package Version Architecture Repository
hmmer-3.0-3-rosa2012.1.i586.rpm 3.0 i586 ROSA Contrib Updates
hmmer-3.0-3-rosa2012.1.x86_64.rpm 3.0 x86_64 ROSA Contrib Updates
hmmer-3.0-2-rosa2012.1.x86_64.rpm 3.0 x86_64 ROSA Contrib
hmmer - - -

Requires

Name Value
libc.so.6 -
libc.so.6(GLIBC_2.0) -
libc.so.6(GLIBC_2.1) -
libc.so.6(GLIBC_2.2) -
libc.so.6(GLIBC_2.3) -
libc.so.6(GLIBC_2.3.4) -
libc.so.6(GLIBC_2.4) -
libm.so.6 -
libm.so.6(GLIBC_2.0) -
libm.so.6(GLIBC_2.1) -
libmpi.so.1 -
libpthread.so.0 -
libpthread.so.0(GLIBC_2.0) -
libpthread.so.0(GLIBC_2.1) -
libpthread.so.0(GLIBC_2.3.2) -

Provides

Name Value
elf(buildid) == 2a1143b282155153882b6e39eeb47f02f0cc9078
elf(buildid) == 2d5ceb896726cb692be3264f3f8af0dfa96801a7
elf(buildid) == 539edce7a96d4167c66a71e89159b99787e51dc6
elf(buildid) == 5c74d090013b4a4b29d6247fcf233837ec43b090
elf(buildid) == 6e9365502e87a1cc802afafdac56d7a3ce583599
elf(buildid) == 7810e8bd9aa11a49382b4cec590b0a8eebdb0768
elf(buildid) == 810bd5a58590ef8e2dbe20ced94b317efdc93bed
elf(buildid) == 8ddb2a65221f428c371028b2d9cfd239fe56206c
elf(buildid) == ad95cef99f6102ef23a1e21ab6fa10a5b62aafe6
elf(buildid) == c16bb2ee89fb268b7d925fcb51a87d65eff70a3f
elf(buildid) == d0e613138a3f1ad51b36fe913223d1960b9aeadf
elf(buildid) == f41189d30358a858d329cc802e24ce23000e99df
hmmer == 3.0-2:2012.1

Download

Type URL
Binary Package hmmer-3.0-2-rosa2012.1.i586.rpm
Source Package hmmer-3.0-2.src.rpm

Install Howto

  1. Enable ROSA Contrib repository on Install and Remove Software
  2. Update packages list:
    # urpmi.update -a
  3. Install hmmer rpm package:
    # urpmi hmmer

Files

Path
/usr/bin/hmmalign
/usr/bin/hmmbuild
/usr/bin/hmmconvert
/usr/bin/hmmemit
/usr/bin/hmmfetch
/usr/bin/hmmpress
/usr/bin/hmmscan
/usr/bin/hmmsearch
/usr/bin/hmmsim
/usr/bin/hmmstat
/usr/bin/jackhmmer
/usr/bin/phmmer
/usr/share/doc/hmmer/INSTALL
/usr/share/doc/hmmer/LICENSE
/usr/share/doc/hmmer/README
/usr/share/doc/hmmer/RELEASE-NOTES
/usr/share/doc/hmmer/Userguide.pdf
/usr/share/doc/hmmer/documentation/
/usr/share/doc/hmmer/documentation/man/boilerplate-tail
/usr/share/doc/hmmer/documentation/man/hmmalign.man
/usr/share/doc/hmmer/documentation/man/hmmbuild.man
/usr/share/doc/hmmer/documentation/man/hmmconvert.man
/usr/share/doc/hmmer/documentation/man/hmmemit.man
/usr/share/doc/hmmer/documentation/man/hmmer.man
/usr/share/doc/hmmer/documentation/man/hmmfetch.man
/usr/share/doc/hmmer/documentation/man/hmmpress.man
/usr/share/doc/hmmer/documentation/man/hmmscan.man
/usr/share/doc/hmmer/documentation/man/hmmsearch.man
/usr/share/doc/hmmer/documentation/man/hmmsim.man
/usr/share/doc/hmmer/documentation/man/hmmstat.man
/usr/share/doc/hmmer/documentation/man/jackhmmer.man
/usr/share/doc/hmmer/documentation/man/phmmer.man
/usr/share/doc/hmmer/tutorial/7LESS_DROME
/usr/share/doc/hmmer/tutorial/HBB_HUMAN
/usr/share/doc/hmmer/tutorial/Pkinase.hmm
/usr/share/doc/hmmer/tutorial/Pkinase.sto
/usr/share/doc/hmmer/tutorial/fn3.hmm
/usr/share/doc/hmmer/tutorial/fn3.out
/usr/share/doc/hmmer/tutorial/fn3.sto
/usr/share/doc/hmmer/tutorial/globins4.hmm
/usr/share/doc/hmmer/tutorial/globins4.out
/usr/share/doc/hmmer/tutorial/globins4.sto
/usr/share/doc/hmmer/tutorial/globins45.fa
/usr/share/doc/hmmer/tutorial/minifam
/usr/share/doc/hmmer/tutorial/minifam.h3f
/usr/share/doc/hmmer/tutorial/minifam.h3i
/usr/share/doc/hmmer/tutorial/minifam.h3m
/usr/share/doc/hmmer/tutorial/minifam.h3p
/usr/share/man/man1/hmmalign.1.xz
/usr/share/man/man1/hmmbuild.1.xz
/usr/share/man/man1/hmmconvert.1.xz
/usr/share/man/man1/hmmemit.1.xz
/usr/share/man/man1/hmmer.1.xz
/usr/share/man/man1/hmmfetch.1.xz
/usr/share/man/man1/hmmpress.1.xz
/usr/share/man/man1/hmmscan.1.xz
/usr/share/man/man1/hmmsearch.1.xz
/usr/share/man/man1/hmmsim.1.xz
/usr/share/man/man1/hmmstat.1.xz
/usr/share/man/man1/jackhmmer.1.xz
/usr/share/man/man1/phmmer.1.xz

Changelog

2010-11-29 - St?phane T?letch?a <steletch@mandriva.org> 3.0-2mdv2011.0
+ Revision: 603122
- Update license version
2010-11-29 - St?phane T?letch?a <steletch@mandriva.org> 3.0-1mdv2011.0
+ Revision: 602714
- Update to hmmer 3.0
- Enable installation of man pages with a ugly hack
- Enable mpi version using openmpi
- Enable checks for catching regressions
2010-03-15 - Eric Fernandez <zeb@mandriva.org> 2.3.2-6mdv2010.1
+ Revision: 519811
- rebuild

See Also

Package Description
hobbit-4.2.0-11-rosa2012.1.i586.rpm Hobbit network monitor
hobbit-client-4.2.0-11-rosa2012.1.i586.rpm Hobbit client reporting data to the Hobbit server
hocr-tools-20091007-1-rosa2012.1.noarch.rpm Tools for manipulating and evaluating the hOCR format
horde-3.3.11-3-rosa2012.1.noarch.rpm The Horde framework
horde-argv-0.1.0-25-rosa2012.1.noarch.rpm Horde command-line argument parsing package
horde-auth-0.1.1-4-rosa2012.1.noarch.rpm Horde Authentication API
horde-block-0.0.2-3-rosa2012.1.noarch.rpm Horde Browser package
horde-browser-0.0.2-3-rosa2012.1.noarch.rpm Horde Browser package
horde-cache-0.0.2-3-rosa2012.1.noarch.rpm Caching API
horde-chora-2.1-7-rosa2012.1.noarch.rpm The Horde CVS viewer
horde-cipher-0.0.2-4-rosa2012.1.noarch.rpm Secret Encryption API
horde-cli-0.0.2-2-rosa2012.1.noarch.rpm Horde CLI API
horde-compress-0.0.2-3-rosa2012.1.noarch.rpm Horde Compression API
horde-datatree-0.0.3-3-rosa2012.1.noarch.rpm DataTree API
horde-date-0.1.0-3-rosa2012.1.noarch.rpm Horde Date package
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