R-GenomeGraphs-1.22.0-1-rosa2012.1.i586.rpm


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Description

R-GenomeGraphs - Plotting genomic information from Ensembl

Distribution: ROSA 2012.1
Repository: ROSA Contrib Updates i586
Package name: R-GenomeGraphs
Package version: 1.22.0
Package release: 1-rosa2012.1
Package architecture: i586
Package type: rpm
Installed size: 1.17 MB
Download size: 856.05 KB
Official Mirror: mirror.rosalab.ru
Genomic data analyses requires integrated visualization of known genomic information and new experimental data. GenomeGraphs uses the biomaRt package to perform live annotation queries to Ensembl and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data. Another strength of GenomeGraphs is to plot different data types such as array CGH, gene expression, sequencing and other data, together in one plot using the same genome coordinate system.

Alternatives

Provides

  • R-GenomeGraphs == 1.22.0-1:2012.1

    Install Howto

    1. Enable ROSA Contrib Updates repository on Install and Remove Software"
    2. Update packages list:
      # urpmi.update -a
    3. Install R-GenomeGraphs rpm package:
      # urpmi R-GenomeGraphs

    Files

    • /usr/lib/R/library/GenomeGraphs/DESCRIPTION
    • /usr/lib/R/library/GenomeGraphs/INDEX
    • /usr/lib/R/library/GenomeGraphs/NAMESPACE
    • /usr/lib/R/library/GenomeGraphs/NEWS
    • /usr/lib/R/library/GenomeGraphs/Meta/Rd.rds
    • /usr/lib/R/library/GenomeGraphs/Meta/data.rds
    • /usr/lib/R/library/GenomeGraphs/Meta/hsearch.rds
    • /usr/lib/R/library/GenomeGraphs/Meta/links.rds
    • /usr/lib/R/library/GenomeGraphs/Meta/nsInfo.rds
    • /usr/lib/R/library/GenomeGraphs/Meta/package.rds
    • /usr/lib/R/library/GenomeGraphs/Meta/vignette.rds
    • /usr/lib/R/library/GenomeGraphs/R/GenomeGraphs
    • /usr/lib/R/library/GenomeGraphs/R/GenomeGraphs.rdb
    • /usr/lib/R/library/GenomeGraphs/R/GenomeGraphs.rdx
    • /usr/lib/R/library/GenomeGraphs/data/exampleData.rda
    • /usr/lib/R/library/GenomeGraphs/data/ideogram.rda
    • /usr/lib/R/library/GenomeGraphs/data/seqDataEx.rda
    • /usr/lib/R/library/GenomeGraphs/data/unrData.rda
    • /usr/lib/R/library/GenomeGraphs/doc/GenomeGraphs.R
    • /usr/lib/R/library/GenomeGraphs/doc/GenomeGraphs.Rnw
    • /usr/lib/R/library/GenomeGraphs/doc/GenomeGraphs.pdf
    • /usr/lib/R/library/GenomeGraphs/doc/index.html
    • /usr/lib/R/library/GenomeGraphs/extra/dummyData.R
    • /usr/lib/R/library/GenomeGraphs/help/AnIndex
    • /usr/lib/R/library/GenomeGraphs/help/GenomeGraphs.rdb
    • /usr/lib/R/library/GenomeGraphs/help/GenomeGraphs.rdx
    • /usr/lib/R/library/GenomeGraphs/help/aliases.rds
    • /usr/lib/R/library/GenomeGraphs/help/paths.rds
    • /usr/lib/R/library/GenomeGraphs/html/00Index.html
    • /usr/lib/R/library/GenomeGraphs/html/AnnotationTrack-class.html
    • /usr/lib/R/library/GenomeGraphs/html/BaseTrack-class.html
    • /usr/lib/R/library/GenomeGraphs/html/DisplayPars-class.html
    • /usr/lib/R/library/GenomeGraphs/html/DisplayPars.html
    • /usr/lib/R/library/GenomeGraphs/html/ExonArray-class.html
    • /usr/lib/R/library/GenomeGraphs/html/Gene-class.html
    • /usr/lib/R/library/GenomeGraphs/html/GeneModel-class.html
    • /usr/lib/R/library/GenomeGraphs/html/GeneRegion-class.html
    • /usr/lib/R/library/GenomeGraphs/html/GenericArray-class.html
    • /usr/lib/R/library/GenomeGraphs/html/GenomeAxis-class.html
    • /usr/lib/R/library/GenomeGraphs/html/HighlightRegion-class.html
    • /usr/lib/R/library/GenomeGraphs/html/Ideogram-class.html
    • /usr/lib/R/library/GenomeGraphs/html/ImplementsTrackOverlay-class.html
    • /usr/lib/R/library/GenomeGraphs/html/Legend-class.html
    • /usr/lib/R/library/GenomeGraphs/html/MappedRead-class.html
    • /usr/lib/R/library/GenomeGraphs/html/Overlay-class.html
    • /usr/lib/R/library/GenomeGraphs/html/R.css
    • /usr/lib/R/library/GenomeGraphs/html/RectangleOverlay-class.html
    • /usr/lib/R/library/GenomeGraphs/html/Segmentation-class.html
    • /usr/lib/R/library/GenomeGraphs/html/Smoothing-class.html
    • /usr/lib/R/library/GenomeGraphs/html/TextOverlay-class.html
    • /usr/lib/R/library/GenomeGraphs/html/Title-class.html
    • /usr/lib/R/library/GenomeGraphs/html/TrackOverlay-class.html
    • /usr/lib/R/library/GenomeGraphs/html/Transcript-class.html
    • /usr/lib/R/library/GenomeGraphs/html/TranscriptRegion-class.html
    • /usr/lib/R/library/GenomeGraphs/html/cn.html
    • /usr/lib/R/library/GenomeGraphs/html/drawGD.html
    • /usr/lib/R/library/GenomeGraphs/html/drawTrackOverlay-methods.html
    • /usr/lib/R/library/GenomeGraphs/html/exonProbePos.html
    • /usr/lib/R/library/GenomeGraphs/html/gdObject-class.html
    • /usr/lib/R/library/GenomeGraphs/html/gdPlot.html
    • /usr/lib/R/library/GenomeGraphs/html/geneBiomart.html
    • /usr/lib/R/library/GenomeGraphs/html/geneRegionBiomart.html
    • /usr/lib/R/library/GenomeGraphs/html/getGenomicRange.html
    • /usr/lib/R/library/GenomeGraphs/html/getPar.html
    • /usr/lib/R/library/GenomeGraphs/html/getSize.html
    • /usr/lib/R/library/GenomeGraphs/html/ideogramTab.html
    • /usr/lib/R/library/GenomeGraphs/html/intensity.html
    • /usr/lib/R/library/GenomeGraphs/html/makeAnnotationTrack.html
    • /usr/lib/R/library/GenomeGraphs/html/makeBaseTrack.html
    • /usr/lib/R/library/GenomeGraphs/html/makeExonArray.html
    • /usr/lib/R/library/GenomeGraphs/html/makeGene.html
    • /usr/lib/R/library/GenomeGraphs/html/makeGeneModel.html
    • /usr/lib/R/library/GenomeGraphs/html/makeGeneRegion.html
    • /usr/lib/R/library/GenomeGraphs/html/makeGenericArray.html
    • /usr/lib/R/library/GenomeGraphs/html/makeGenomeAxis.html
    • /usr/lib/R/library/GenomeGraphs/html/makeIdeogram.html
    • /usr/lib/R/library/GenomeGraphs/html/makeLegend.html
    • /usr/lib/R/library/GenomeGraphs/html/makeRectangleOverlay.html
    • /usr/lib/R/library/GenomeGraphs/html/makeSegmentation.html
    • /usr/lib/R/library/GenomeGraphs/html/makeSmoothing.html
    • /usr/lib/R/library/GenomeGraphs/html/makeTextOverlay.html
    • /usr/lib/R/library/GenomeGraphs/html/makeTitle.html
    • /usr/lib/R/library/GenomeGraphs/html/makeTranscript.html
    • /usr/lib/R/library/GenomeGraphs/html/probestart.html
    • /usr/lib/R/library/GenomeGraphs/html/segEnd.html
    • /usr/lib/R/library/GenomeGraphs/html/segStart.html
    • /usr/lib/R/library/GenomeGraphs/html/segments.html
    • /usr/lib/R/library/GenomeGraphs/html/seqDataEx.html
    • /usr/lib/R/library/GenomeGraphs/html/setPar.html
    • /usr/lib/R/library/GenomeGraphs/html/showDisplayOptions.html
    • /usr/lib/R/library/GenomeGraphs/html/unrData.html
    • /usr/lib/R/library/GenomeGraphs/html/unrNProbes.html
    • /usr/lib/R/library/GenomeGraphs/html/unrPositions.html
    • /usr/lib/R/library/GenomeGraphs/html/yeastCons1.html

    Changelog

    2013-11-08 - Denis Silakov <denis.silakov@rosalab.ru> 1.22.0-1 + Revision: d8d58a4 - LOG Updated to 1.22.0 (by updates_builder)

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