R-GenomeGraphs-1.22.0-1-rosa2012.1.i586.rpm


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Description

R-GenomeGraphs - Plotting genomic information from Ensembl

Property Value
Distribution ROSA 2012.1
Repository ROSA Contrib Updates i586
Package name R-GenomeGraphs
Package version 1.22.0
Package release 1-rosa2012.1
Package architecture i586
Package type rpm
Installed size 1.17 MB
Download size 856.05 KB
Official Mirror mirror.rosalab.ru
Genomic data analyses requires integrated visualization of known genomic
information and new experimental data.  GenomeGraphs uses the biomaRt
package to perform live annotation queries to Ensembl and translates this
to e.g. gene/transcript structures in viewports of the grid graphics
package. This results in genomic information plotted together with your
data.  Another strength of GenomeGraphs is to plot different data types
such as array CGH, gene expression, sequencing and other data, together in
one plot using the same genome coordinate system.

Alternatives

Package Version Architecture Repository
R-GenomeGraphs-1.22.0-1-rosa2012.1.x86_64.rpm 1.22.0 x86_64 ROSA Contrib Updates
R-GenomeGraphs - - -

Requires

Name Value
R-biomaRt -
R-grid -
R-methods -

Provides

Name Value
R-GenomeGraphs == 1.22.0-1:2012.1

Download

Type URL
Binary Package R-GenomeGraphs-1.22.0-1-rosa2012.1.i586.rpm
Source Package R-GenomeGraphs-1.22.0-1.src.rpm

Install Howto

  1. Enable ROSA Contrib Updates repository on Install and Remove Software"
  2. Update packages list:
    # urpmi.update -a
  3. Install R-GenomeGraphs rpm package:
    # urpmi R-GenomeGraphs

Files

Path
/usr/lib/R/library/GenomeGraphs/DESCRIPTION
/usr/lib/R/library/GenomeGraphs/INDEX
/usr/lib/R/library/GenomeGraphs/NAMESPACE
/usr/lib/R/library/GenomeGraphs/NEWS
/usr/lib/R/library/GenomeGraphs/Meta/Rd.rds
/usr/lib/R/library/GenomeGraphs/Meta/data.rds
/usr/lib/R/library/GenomeGraphs/Meta/hsearch.rds
/usr/lib/R/library/GenomeGraphs/Meta/links.rds
/usr/lib/R/library/GenomeGraphs/Meta/nsInfo.rds
/usr/lib/R/library/GenomeGraphs/Meta/package.rds
/usr/lib/R/library/GenomeGraphs/Meta/vignette.rds
/usr/lib/R/library/GenomeGraphs/R/GenomeGraphs
/usr/lib/R/library/GenomeGraphs/R/GenomeGraphs.rdb
/usr/lib/R/library/GenomeGraphs/R/GenomeGraphs.rdx
/usr/lib/R/library/GenomeGraphs/data/exampleData.rda
/usr/lib/R/library/GenomeGraphs/data/ideogram.rda
/usr/lib/R/library/GenomeGraphs/data/seqDataEx.rda
/usr/lib/R/library/GenomeGraphs/data/unrData.rda
/usr/lib/R/library/GenomeGraphs/doc/GenomeGraphs.R
/usr/lib/R/library/GenomeGraphs/doc/GenomeGraphs.Rnw
/usr/lib/R/library/GenomeGraphs/doc/GenomeGraphs.pdf
/usr/lib/R/library/GenomeGraphs/doc/index.html
/usr/lib/R/library/GenomeGraphs/extra/dummyData.R
/usr/lib/R/library/GenomeGraphs/help/AnIndex
/usr/lib/R/library/GenomeGraphs/help/GenomeGraphs.rdb
/usr/lib/R/library/GenomeGraphs/help/GenomeGraphs.rdx
/usr/lib/R/library/GenomeGraphs/help/aliases.rds
/usr/lib/R/library/GenomeGraphs/help/paths.rds
/usr/lib/R/library/GenomeGraphs/html/00Index.html
/usr/lib/R/library/GenomeGraphs/html/AnnotationTrack-class.html
/usr/lib/R/library/GenomeGraphs/html/BaseTrack-class.html
/usr/lib/R/library/GenomeGraphs/html/DisplayPars-class.html
/usr/lib/R/library/GenomeGraphs/html/DisplayPars.html
/usr/lib/R/library/GenomeGraphs/html/ExonArray-class.html
/usr/lib/R/library/GenomeGraphs/html/Gene-class.html
/usr/lib/R/library/GenomeGraphs/html/GeneModel-class.html
/usr/lib/R/library/GenomeGraphs/html/GeneRegion-class.html
/usr/lib/R/library/GenomeGraphs/html/GenericArray-class.html
/usr/lib/R/library/GenomeGraphs/html/GenomeAxis-class.html
/usr/lib/R/library/GenomeGraphs/html/HighlightRegion-class.html
/usr/lib/R/library/GenomeGraphs/html/Ideogram-class.html
/usr/lib/R/library/GenomeGraphs/html/ImplementsTrackOverlay-class.html
/usr/lib/R/library/GenomeGraphs/html/Legend-class.html
/usr/lib/R/library/GenomeGraphs/html/MappedRead-class.html
/usr/lib/R/library/GenomeGraphs/html/Overlay-class.html
/usr/lib/R/library/GenomeGraphs/html/R.css
/usr/lib/R/library/GenomeGraphs/html/RectangleOverlay-class.html
/usr/lib/R/library/GenomeGraphs/html/Segmentation-class.html
/usr/lib/R/library/GenomeGraphs/html/Smoothing-class.html
/usr/lib/R/library/GenomeGraphs/html/TextOverlay-class.html
/usr/lib/R/library/GenomeGraphs/html/Title-class.html
/usr/lib/R/library/GenomeGraphs/html/TrackOverlay-class.html
/usr/lib/R/library/GenomeGraphs/html/Transcript-class.html
/usr/lib/R/library/GenomeGraphs/html/TranscriptRegion-class.html
/usr/lib/R/library/GenomeGraphs/html/cn.html
/usr/lib/R/library/GenomeGraphs/html/drawGD.html
/usr/lib/R/library/GenomeGraphs/html/drawTrackOverlay-methods.html
/usr/lib/R/library/GenomeGraphs/html/exonProbePos.html
/usr/lib/R/library/GenomeGraphs/html/gdObject-class.html
/usr/lib/R/library/GenomeGraphs/html/gdPlot.html
/usr/lib/R/library/GenomeGraphs/html/geneBiomart.html
/usr/lib/R/library/GenomeGraphs/html/geneRegionBiomart.html
/usr/lib/R/library/GenomeGraphs/html/getGenomicRange.html
/usr/lib/R/library/GenomeGraphs/html/getPar.html
/usr/lib/R/library/GenomeGraphs/html/getSize.html
/usr/lib/R/library/GenomeGraphs/html/ideogramTab.html
/usr/lib/R/library/GenomeGraphs/html/intensity.html
/usr/lib/R/library/GenomeGraphs/html/makeAnnotationTrack.html
/usr/lib/R/library/GenomeGraphs/html/makeBaseTrack.html
/usr/lib/R/library/GenomeGraphs/html/makeExonArray.html
/usr/lib/R/library/GenomeGraphs/html/makeGene.html
/usr/lib/R/library/GenomeGraphs/html/makeGeneModel.html
/usr/lib/R/library/GenomeGraphs/html/makeGeneRegion.html
/usr/lib/R/library/GenomeGraphs/html/makeGenericArray.html
/usr/lib/R/library/GenomeGraphs/html/makeGenomeAxis.html
/usr/lib/R/library/GenomeGraphs/html/makeIdeogram.html
/usr/lib/R/library/GenomeGraphs/html/makeLegend.html
/usr/lib/R/library/GenomeGraphs/html/makeRectangleOverlay.html
/usr/lib/R/library/GenomeGraphs/html/makeSegmentation.html
/usr/lib/R/library/GenomeGraphs/html/makeSmoothing.html
/usr/lib/R/library/GenomeGraphs/html/makeTextOverlay.html
/usr/lib/R/library/GenomeGraphs/html/makeTitle.html
/usr/lib/R/library/GenomeGraphs/html/makeTranscript.html
/usr/lib/R/library/GenomeGraphs/html/probestart.html
/usr/lib/R/library/GenomeGraphs/html/segEnd.html
/usr/lib/R/library/GenomeGraphs/html/segStart.html
/usr/lib/R/library/GenomeGraphs/html/segments.html
/usr/lib/R/library/GenomeGraphs/html/seqDataEx.html
/usr/lib/R/library/GenomeGraphs/html/setPar.html
/usr/lib/R/library/GenomeGraphs/html/showDisplayOptions.html
/usr/lib/R/library/GenomeGraphs/html/unrData.html
/usr/lib/R/library/GenomeGraphs/html/unrNProbes.html
/usr/lib/R/library/GenomeGraphs/html/unrPositions.html
/usr/lib/R/library/GenomeGraphs/html/yeastCons1.html

Changelog

2013-11-08 - Denis Silakov <denis.silakov@rosalab.ru> 1.22.0-1
+ Revision: d8d58a4
- LOG Updated to 1.22.0 (by updates_builder)

See Also

Package Description
R-GenomicFeatures-1.14.2-1-rosa2012.1.i586.rpm Tools for making and manipulating transcript centric annotations
R-GenomicRanges-1.14.4-1-rosa2012.1.i586.rpm Representation and manipulation of genomic intervals
R-HSAUR-1.3.3-1-rosa2012.1.i586.rpm A Handbook of Statistical Analyses Using R
R-Hmisc-3.12.2-3-rosa2012.1.i586.rpm Harrell Miscellaneous
R-Homo.sapiens-1.1.2-1-rosa2012.1.noarch.rpm Annotation package for the Homo.sapiens object
R-IRanges-1.20.6-1-rosa2012.1.i586.rpm Infrastructure for manipulating intervals on sequences
R-ISwR-2.0_6-2-rosa2012.1.noarch.rpm Introductory Statistics with R
R-JGR-1.7.16-1-rosa2012.1.noarch.rpm JGR - Java GUI for R
R-JavaGD-0.6.1-1-rosa2012.1.i586.rpm Java Graphics Device
R-KEGG.db-2.10.1-1-rosa2012.1.noarch.rpm A set of annotation maps for KEGG
R-Kendall-2.2-1-rosa2012.1.i586.rpm Kendall rank correlation and Mann-Kendall trend test
R-LearnBayes-2.12-1-rosa2012.1.noarch.rpm Functions for Learning Bayesian Inference
R-MBESS-3.3.3-1-rosa2012.1.noarch.rpm MBESS
R-MCMCpack-1.3.3-1-rosa2012.1.i586.rpm Markov chain Monte Carlo (MCMC) Package
R-MEMSS-0.9.2-1-rosa2012.1.noarch.rpm Data sets from Mixed-effects Models in S
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