R-biomaRt-2.18.0-1-rosa2012.1.i586.rpm


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Description

R-biomaRt - Interface to BioMart databases (e.g. Ensembl, COSMIC ,Wormbase and Gramene)

Property Value
Distribution ROSA 2012.1
Repository ROSA Contrib Updates i586
Package name R-biomaRt
Package version 2.18.0
Package release 1-rosa2012.1
Package architecture i586
Package type rpm
Installed size 459.00 KB
Download size 339.29 KB
Official Mirror mirror.rosalab.ru
In recent years a wealth of biological data has become available in public
data repositories. Easy access to these valuable data resources and firm
integration with data analysis is needed for comprehensive bioinformatics
data analysis.  biomaRt provides an interface to a growing collection of
databases implementing the BioMart software suite
(http://www.biomart.org). The package enables retrieval of large amounts
of data in a uniform way without the need to know the underlying database
schemas or write complex SQL queries. Examples of BioMart databases are
Ensembl, COSMIC, Uniprot, HGNC, Gramene, Wormbase and dbSNP mapped to
Ensembl. These major databases give biomaRt users direct access to a
diverse set of data and enable a wide range of powerful online queries
from gene annotation to database mining.

Alternatives

Package Version Architecture Repository
R-biomaRt-2.18.0-1-rosa2012.1.x86_64.rpm 2.18.0 x86_64 ROSA Contrib Updates
R-biomaRt - - -

Requires

Name Value
R-RCurl -
R-XML -
R-annotate -
R-methods -

Provides

Name Value
R-biomaRt == 2.18.0-1:2012.1

Download

Type URL
Binary Package R-biomaRt-2.18.0-1-rosa2012.1.i586.rpm
Source Package R-biomaRt-2.18.0-1.src.rpm

Install Howto

  1. Enable ROSA Contrib Updates repository on Install and Remove Software
  2. Update packages list:
    # urpmi.update -a
  3. Install R-biomaRt rpm package:
    # urpmi R-biomaRt

Files

Path
/usr/lib/R/library/biomaRt/CITATION
/usr/lib/R/library/biomaRt/DESCRIPTION
/usr/lib/R/library/biomaRt/INDEX
/usr/lib/R/library/biomaRt/NAMESPACE
/usr/lib/R/library/biomaRt/Meta/Rd.rds
/usr/lib/R/library/biomaRt/Meta/hsearch.rds
/usr/lib/R/library/biomaRt/Meta/links.rds
/usr/lib/R/library/biomaRt/Meta/nsInfo.rds
/usr/lib/R/library/biomaRt/Meta/package.rds
/usr/lib/R/library/biomaRt/Meta/vignette.rds
/usr/lib/R/library/biomaRt/R/biomaRt
/usr/lib/R/library/biomaRt/R/biomaRt.rdb
/usr/lib/R/library/biomaRt/R/biomaRt.rdx
/usr/lib/R/library/biomaRt/doc/biomaRt.R
/usr/lib/R/library/biomaRt/doc/biomaRt.Rnw
/usr/lib/R/library/biomaRt/doc/biomaRt.pdf
/usr/lib/R/library/biomaRt/doc/index.html
/usr/lib/R/library/biomaRt/help/AnIndex
/usr/lib/R/library/biomaRt/help/aliases.rds
/usr/lib/R/library/biomaRt/help/biomaRt.rdb
/usr/lib/R/library/biomaRt/help/biomaRt.rdx
/usr/lib/R/library/biomaRt/help/paths.rds
/usr/lib/R/library/biomaRt/html/00Index.html
/usr/lib/R/library/biomaRt/html/Mart-class.html
/usr/lib/R/library/biomaRt/html/NP2009code.html
/usr/lib/R/library/biomaRt/html/R.css
/usr/lib/R/library/biomaRt/html/attributePages.html
/usr/lib/R/library/biomaRt/html/exportFASTA.html
/usr/lib/R/library/biomaRt/html/filterOptions.html
/usr/lib/R/library/biomaRt/html/filterType.html
/usr/lib/R/library/biomaRt/html/getBM.html
/usr/lib/R/library/biomaRt/html/getBMlist.html
/usr/lib/R/library/biomaRt/html/getGene.html
/usr/lib/R/library/biomaRt/html/getLDS.html
/usr/lib/R/library/biomaRt/html/getSequence.html
/usr/lib/R/library/biomaRt/html/getXML.html
/usr/lib/R/library/biomaRt/html/listAttributes.html
/usr/lib/R/library/biomaRt/html/listDatasets.html
/usr/lib/R/library/biomaRt/html/listFilters.html
/usr/lib/R/library/biomaRt/html/listMarts.html
/usr/lib/R/library/biomaRt/html/useDataset.html
/usr/lib/R/library/biomaRt/html/useMart.html
/usr/lib/R/library/biomaRt/scripts/Integration-NP.R

Changelog

2013-11-09 - Denis Silakov <denis.silakov@rosalab.ru> 2.18.0-1
+ Revision: ffa1f28
- LOG Updated to 2.18.0 (by updates_builder)

See Also

Package Description
R-bitops-1.0.6-1-rosa2012.1.i586.rpm Functions for Bitwise operations
R-boot-1.3.10-1-rosa2012.1.noarch.rpm Bootstrap Functions (originally by Angelo Canty for S)
R-ca-0.53-1-rosa2012.1.noarch.rpm Simple, Multiple and Joint Correspondence Analysis
R-caTools-1.16-1-rosa2012.1.i586.rpm Tools: moving window statistics, GIF, Base64, ROC AUC, etc
R-cairoDevice-2.19-2-rosa2012.1.i586.rpm Cairo-based cross-platform antialiased graphics device driver
R-candisc-0.6.5-1-rosa2012.1.noarch.rpm Visualizing Generalized Canonical Discriminant and Correlation Analysis
R-car-2.0.19-3-rosa2012.1.noarch.rpm Companion to Applied Regression
R-catdata-1.1-2-rosa2012.1.i586.rpm Categorical Data
R-cba-0.2.14-1-rosa2012.1.i586.rpm Clustering for Business Analytics
R-cem-1.1.5-1-rosa2012.1.noarch.rpm Coarsened Exact Matching
R-chron-2.3.45-1-rosa2012.1.i586.rpm Chronological objects which can handle dates and times
R-clue-0.3.48-1-rosa2012.1.i586.rpm Cluster ensembles
R-clv-0.3_2-2-rosa2012.1.i586.rpm Cluster Validation Techniques
R-coda-0.16.1-1-rosa2012.1.noarch.rpm Output analysis and diagnostics for MCMC
R-coin-1.0.23-1-rosa2012.1.i586.rpm Conditional Inference Procedures in a Permutation Test Framework
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