R-cran-aaMI - Mutual information for protein sequence alignments for R

Property Value
Distribution ROSA Enterprise Desktop
Repository ROSA Contrib Updates x86_64
Package name R-cran-aaMI
Package version 1.0.1
Package release 6-rosa.lts2012.0
Package architecture x86_64
Package type rpm
Installed size 17.82 KB
Download size 21.00 KB
Official Mirror mirror.rosalab.ru
This package contains five functions. read.FASTA reads in a FASTA-format
alignment file and parses it into a data frame. read.CX reads in a
ClustalX .aln-format file and parses it into a data frame. read.Gdoc reads
in a GeneDoc .msf-format file and parses it into a data frame.The alignment
data frame returned by each of these functions has the sequence IDs as the
row names and each site in the alignment is a column in the data frame.The
program aaMI calculates the mutual information between each pair of sites
(columns) in the protein sequence alignment data frame.The program aaMIn
calculates the normalized mutual information between pairs of sites in the
protein sequence alignment data frame. The normalized mutual information
of sites i and j is the mutual information of these sites divided by their
joint entropy.


Package Version Architecture Repository
R-cran-aaMI-1.0.1-6-rosa.lts2012.0.i586.rpm 1.0.1 i586 ROSA Contrib Updates
R-cran-aaMI - - -


Name Value
R-base -


Name Value
R-cran-aaMI == 1.0.1-6:2012.0


Type URL
Binary Package R-cran-aaMI-1.0.1-6-rosa.lts2012.0.x86_64.rpm
Source Package R-cran-aaMI-1.0.1-6.src.rpm

Install Howto

  1. Enable ROSA Contrib Updates repository on Install and Remove Software"
  2. Update packages list:
    # urpmi.update -a
  3. Install R-cran-aaMI rpm package:
    # urpmi R-cran-aaMI




2010-12-09 - Oden Eriksson <oeriksson@mandriva.com> 1.0.1-6mdv2011.0
+ Revision: 616441
- the mass rebuild of 2010.0 packages
2009-09-08 - Thierry Vignaud <tv@mandriva.org> 1.0.1-5mdv2010.0
+ Revision: 433065
- rebuild

See Also

Package Description
R-cran-abind-1.1.0-6-rosa.lts2012.0.x86_64.rpm Combine multi-dimensional arrays for R
R-cran-acepack- R module for selecting regression transformations
R-cran-ada-2.0.1-6-rosa.lts2012.0.x86_64.rpm R module for boosting algorithms for a binary response
R-cran-adapt-1.0.4-7-rosa.lts2012.0.x86_64.rpm Multidimensional numerical integration for R
R-cran-adimpro-0.4.4-9-rosa.lts2012.0.x86_64.rpm Adaptive smoothing of digital images for R
R-cran-adk-1.0-6-rosa.lts2012.0.x86_64.rpm Anderson-Darling k-sample test and combinations of such tests for R
R-cran-car-1.2.16-2-rosa.lts2012.0.x86_64.rpm Companion to Applied Regression for R
R-cran-chron-2.3.33-1-rosa.lts2012.0.x86_64.rpm Chronological objects for R
R-cran-colorspace-1.0.1-1-rosa.lts2012.0.x86_64.rpm Color Space Manipulation for R
R-cran-effects-2.0.10-2-rosa.lts2012.0.x86_64.rpm Effects Displays for R
R-cran-ellipse-0.3.5-3-rosa.lts2012.0.x86_64.rpm Functions for drawing ellipses for R
R-cran-labdsv-1.3.1-3-rosa.lts2012.0.x86_64.rpm R ordination and multivariate analysis for ecology
R-cran-leaps-2.9-1-rosa.lts2012.0.x86_64.rpm Regression subset for R
R-cran-rattle-2.2.91-6-rosa.lts2012.0.x86_64.rpm Gnome R data mining
R-cran-relimp-1.0.1-1-rosa.lts2012.0.x86_64.rpm Relative Contribution of Effects in a Regression Model for R