R-cran-aaMI - Mutual information for protein sequence alignments for R

Distribution: ROSA Enterprise Desktop
Repository: ROSA Contrib Updates x86_64
Package name: R-cran-aaMI
Package version: 1.0.1
Package release: 6-rosa.lts2012.0
Package architecture: x86_64
Package type: rpm
Installed size: 17.82 KB
Download size: 21.00 KB
Official Mirror: mirror.rosalab.ru
This package contains five functions. read.FASTA reads in a FASTA-format alignment file and parses it into a data frame. read.CX reads in a ClustalX .aln-format file and parses it into a data frame. read.Gdoc reads in a GeneDoc .msf-format file and parses it into a data frame.The alignment data frame returned by each of these functions has the sequence IDs as the row names and each site in the alignment is a column in the data frame.The program aaMI calculates the mutual information between each pair of sites (columns) in the protein sequence alignment data frame.The program aaMIn calculates the normalized mutual information between pairs of sites in the protein sequence alignment data frame. The normalized mutual information of sites i and j is the mutual information of these sites divided by their joint entropy.




  • R-cran-aaMI == 1.0.1-6:2012.0

    Install Howto

    1. Enable ROSA Contrib Updates repository on Install and Remove Software"
    2. Update packages list:
      # urpmi.update -a
    3. Install R-cran-aaMI rpm package:
      # urpmi R-cran-aaMI


    • /usr/lib64/R/library/aaMI/DESCRIPTION
    • /usr/lib64/R/library/aaMI/INDEX
    • /usr/lib64/R/library/aaMI/Meta/Rd.rds
    • /usr/lib64/R/library/aaMI/Meta/hsearch.rds
    • /usr/lib64/R/library/aaMI/Meta/links.rds
    • /usr/lib64/R/library/aaMI/Meta/package.rds
    • /usr/lib64/R/library/aaMI/R/aaMI
    • /usr/lib64/R/library/aaMI/R/aaMI.rdb
    • /usr/lib64/R/library/aaMI/R/aaMI.rdx
    • /usr/lib64/R/library/aaMI/help/AnIndex
    • /usr/lib64/R/library/aaMI/help/aaMI.rdb
    • /usr/lib64/R/library/aaMI/help/aaMI.rdx
    • /usr/lib64/R/library/aaMI/help/aliases.rds
    • /usr/lib64/R/library/aaMI/help/paths.rds
    • /usr/lib64/R/library/aaMI/html/00Index.html


    2010-12-09 - Oden Eriksson <oeriksson@mandriva.com> 1.0.1-6mdv2011.0 + Revision: 616441 - the mass rebuild of 2010.0 packages

    2009-09-08 - Thierry Vignaud <tv@mandriva.org> 1.0.1-5mdv2010.0 + Revision: 433065 - rebuild