tree-puzzle - Maximum likelihood analysis for nucleotide, amino acid and two-state data

Distribution: ROSA Enterprise Desktop
Repository: ROSA Contrib Updates x86_64
Package name: tree-puzzle
Package version: 5.2
Package release: 6-rosa.lts2012.0
Package architecture: x86_64
Package type: rpm
Installed size: 944.14 KB
Download size: 562.39 KB
Official Mirror:
TREE-PUZZLE is a computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood. It implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.



  • tree-puzzle == 5.2-6:2012.0

    Install Howto

    1. Enable ROSA Contrib Updates repository on Install and Remove Software"
    2. Update packages list:
      # urpmi.update -a
    3. Install tree-puzzle rpm package:
      # urpmi tree-puzzle


    • /usr/bin/puzzle
    • /usr/share/doc/tree-puzzle/AUTHORS
    • /usr/share/doc/tree-puzzle/COPYING
    • /usr/share/doc/tree-puzzle/ChangeLog
    • /usr/share/doc/tree-puzzle/EF.3trees
    • /usr/share/doc/tree-puzzle/EF.phy
    • /usr/share/doc/tree-puzzle/README
    • /usr/share/doc/tree-puzzle/atp6.a
    • /usr/share/doc/tree-puzzle/globin.a
    • /usr/share/doc/tree-puzzle/globin.ctrees
    • /usr/share/doc/tree-puzzle/globin.trees
    • /usr/share/doc/tree-puzzle/marswolf.ctrees
    • /usr/share/doc/tree-puzzle/marswolf.n
    • /usr/share/doc/tree-puzzle/marswolf.trees
    • /usr/share/doc/tree-puzzle/primates.b
    • /usr/share/doc/tree-puzzle/primates.ctrees
    • /usr/share/doc/tree-puzzle/primates.trees
    • /usr/share/doc/tree-puzzle/tree-puzzle.pdf


    2010-12-08 - Oden Eriksson <> 5.2-6mdv2011.0 + Revision: 615238 - the mass rebuild of 2010.1 packages

    2010-03-15 - Eric Fernandez <> 5.2-5mdv2010.1 + Revision: 519809 - bump release version and rebuild