R-multtest-2.20.0-1-rosa2014.1.i586.rpm


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Description

R-multtest - Resampling-based multiple hypothesis testing

Property Value
Distribution ROSA 2014.1
Repository ROSA Contrib i586
Package name R-multtest
Package version 2.20.0
Package release 1-rosa2014.1
Package architecture i586
Package type rpm
Installed size 993.03 KB
Download size 650.95 KB
Official Mirror mirror.rosalab.ru
Non-parametric bootstrap and permutation resampling-based multiple testing
procedures (including empirical Bayes methods) for controlling the
family-wise error rate (FWER), generalized family-wise error rate (gFWER),
tail probability of the proportion of false positives (TPPFP), and false
discovery rate (FDR).  Several choices of bootstrap-based null
distribution are implemented (centered, centered and scaled,
quantile-transformed). Single-step and step-wise methods are available.
Tests based on a variety of t- and F-statistics (including t-statistics
based on regression parameters from linear and survival models as well as
those based on correlation parameters) are included.  When probing
hypotheses with t-statistics, users may also select a potentially faster
null distribution which is multivariate normal with mean zero and variance
covariance matrix derived from the vector influence function.  Results are
reported in terms of adjusted p-values, confidence regions and test
statistic cutoffs. The procedures are directly applicable to identifying
differentially expressed genes in DNA microarray experiments.

Alternatives

Package Version Architecture Repository
R-multtest-2.20.0-1-rosa2014.1.x86_64.rpm 2.20.0 x86_64 ROSA Contrib
R-multtest - - -

Requires

Name Value
R-Biobase -
R-MASS -
R-methods -
R-snow -
R-stats4 -
R-survival -
libR.so -
libc.so.6 -
libc.so.6(GLIBC_2.0) -
libc.so.6(GLIBC_2.1) -
libc.so.6(GLIBC_2.1.3) -
libc.so.6(GLIBC_2.3.4) -
libc.so.6(GLIBC_2.4) -
libc.so.6(GLIBC_2.7) -
libm.so.6 -
libm.so.6(GLIBC_2.0) -

Provides

Name Value
R-multtest == 2.20.0-1:2014.1
multtest.so -

Download

Type URL
Binary Package R-multtest-2.20.0-1-rosa2014.1.i586.rpm
Source Package R-multtest-2.20.0-1.src.rpm

Install Howto

  1. Enable ROSA Contrib repository on Install and Remove Software
  2. Update packages list:
    # urpmi.update -a
  3. Install R-multtest rpm package:
    # urpmi R-multtest

Files

Path
/usr/lib/R/library/multtest/CITATION
/usr/lib/R/library/multtest/DESCRIPTION
/usr/lib/R/library/multtest/INDEX
/usr/lib/R/library/multtest/NAMESPACE
/usr/lib/R/library/multtest/Meta/Rd.rds
/usr/lib/R/library/multtest/Meta/data.rds
/usr/lib/R/library/multtest/Meta/hsearch.rds
/usr/lib/R/library/multtest/Meta/links.rds
/usr/lib/R/library/multtest/Meta/nsInfo.rds
/usr/lib/R/library/multtest/Meta/package.rds
/usr/lib/R/library/multtest/R/multtest
/usr/lib/R/library/multtest/R/multtest.rdb
/usr/lib/R/library/multtest/R/multtest.rdx
/usr/lib/R/library/multtest/data/golub.RData
/usr/lib/R/library/multtest/help/AnIndex
/usr/lib/R/library/multtest/help/aliases.rds
/usr/lib/R/library/multtest/help/multtest.rdb
/usr/lib/R/library/multtest/help/multtest.rdx
/usr/lib/R/library/multtest/help/paths.rds
/usr/lib/R/library/multtest/html/00Index.html
/usr/lib/R/library/multtest/html/EBMTP-class.html
/usr/lib/R/library/multtest/html/EBMTP.html
/usr/lib/R/library/multtest/html/Hsets.html
/usr/lib/R/library/multtest/html/MTP-class.html
/usr/lib/R/library/multtest/html/MTP-methods.html
/usr/lib/R/library/multtest/html/MTP.html
/usr/lib/R/library/multtest/html/R.css
/usr/lib/R/library/multtest/html/boot.null.html
/usr/lib/R/library/multtest/html/corr.null.html
/usr/lib/R/library/multtest/html/fwer2gfwer.html
/usr/lib/R/library/multtest/html/get.index.html
/usr/lib/R/library/multtest/html/golub.html
/usr/lib/R/library/multtest/html/meanX.html
/usr/lib/R/library/multtest/html/mt.internal.html
/usr/lib/R/library/multtest/html/mt.maxT.html
/usr/lib/R/library/multtest/html/mt.plot.html
/usr/lib/R/library/multtest/html/mt.rawp2adjp.html
/usr/lib/R/library/multtest/html/mt.reject.html
/usr/lib/R/library/multtest/html/mt.sample.teststat.html
/usr/lib/R/library/multtest/html/mt.teststat.html
/usr/lib/R/library/multtest/html/ss.maxT.html
/usr/lib/R/library/multtest/html/wapply.html
/usr/lib/R/library/multtest/libs/multtest.so
/usr/lib/R/library/multtest/otherDocs/MTP.Rnw
/usr/lib/R/library/multtest/otherDocs/MTPALL.Rnw
/usr/lib/R/library/multtest/otherDocs/multtest.Rnw

See Also

Package Description
R-munsell-0.4.2-2-rosa2014.1.noarch.rpm Munsell color system
R-mvtnorm-1.0.0-1-rosa2014.1.i586.rpm Multivariate Normal and t Distributions
R-network-1.9.0-2-rosa2014.1.i586.rpm Classes for Relational Data
R-networkDynamic-0.6.2-2-rosa2014.1.i586.rpm Dynamic Extensions for Network Objects
R-networksis-2.1.2-2-rosa2014.1.i586.rpm Simulate fixed marginals bipartite graphs using sequential importance sampling
R-nor1mix-1.1.4-2-rosa2014.1.i586.rpm Normal (1-d) Mixture Models (S3 Classes and Methods)
R-np-0.50.1-3-rosa2014.1.i586.rpm Nonparametric kernel smoothing methods for mixed data types
R-numDeriv-2012.9.1-3-rosa2014.1.i586.rpm Accurate Numerical Derivatives
R-nws-1.7.0.1-3-rosa2014.1.noarch.rpm R functions for NetWorkSpaces and Sleigh
R-odfWeave-0.8.4-2-rosa2014.1.i586.rpm Sweave processing of Open Document Format (ODF) files
R-optextras-2013.10.27-2-rosa2014.1.noarch.rpm A set of tools to support optimization methods
R-optimx-2013.8.6-2-rosa2014.1.noarch.rpm A Replacement and Extension of the optim() Function
R-ordinal-2013.9.30-2-rosa2014.1.i586.rpm Regression Models for Ordinal Data
R-org.At.tair.db-2.10.1-2-rosa2014.1.noarch.rpm Genome wide annotation for Arabidopsis
R-org.Hs.eg.db-2.10.1-2-rosa2014.1.noarch.rpm Genome wide annotation for Human
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