R-multtest-2.20.0-1-rosa2014.1.i586.rpm


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Description

R-multtest - Resampling-based multiple hypothesis testing

Distribution: ROSA 2014.1
Repository: ROSA Contrib i586
Package name: R-multtest
Package version: 2.20.0
Package release: 1-rosa2014.1
Package architecture: i586
Package type: rpm
Installed size: 993.03 KB
Download size: 650.95 KB
Official Mirror: mirror.rosalab.ru
Non-parametric bootstrap and permutation resampling-based multiple testing procedures (including empirical Bayes methods) for controlling the family-wise error rate (FWER), generalized family-wise error rate (gFWER), tail probability of the proportion of false positives (TPPFP), and false discovery rate (FDR). Several choices of bootstrap-based null distribution are implemented (centered, centered and scaled, quantile-transformed). Single-step and step-wise methods are available. Tests based on a variety of t- and F-statistics (including t-statistics based on regression parameters from linear and survival models as well as those based on correlation parameters) are included. When probing hypotheses with t-statistics, users may also select a potentially faster null distribution which is multivariate normal with mean zero and variance covariance matrix derived from the vector influence function. Results are reported in terms of adjusted p-values, confidence regions and test statistic cutoffs. The procedures are directly applicable to identifying differentially expressed genes in DNA microarray experiments.

Alternatives

Provides

  • R-multtest == 2.20.0-1:2014.1
  • multtest.so

    Download

    Install Howto

    1. Enable ROSA Contrib repository on Install and Remove Software"
    2. Update packages list:
      # urpmi.update -a
    3. Install R-multtest rpm package:
      # urpmi R-multtest

    Files

    • /usr/lib/R/library/multtest/CITATION
    • /usr/lib/R/library/multtest/DESCRIPTION
    • /usr/lib/R/library/multtest/INDEX
    • /usr/lib/R/library/multtest/NAMESPACE
    • /usr/lib/R/library/multtest/Meta/Rd.rds
    • /usr/lib/R/library/multtest/Meta/data.rds
    • /usr/lib/R/library/multtest/Meta/hsearch.rds
    • /usr/lib/R/library/multtest/Meta/links.rds
    • /usr/lib/R/library/multtest/Meta/nsInfo.rds
    • /usr/lib/R/library/multtest/Meta/package.rds
    • /usr/lib/R/library/multtest/R/multtest
    • /usr/lib/R/library/multtest/R/multtest.rdb
    • /usr/lib/R/library/multtest/R/multtest.rdx
    • /usr/lib/R/library/multtest/data/golub.RData
    • /usr/lib/R/library/multtest/help/AnIndex
    • /usr/lib/R/library/multtest/help/aliases.rds
    • /usr/lib/R/library/multtest/help/multtest.rdb
    • /usr/lib/R/library/multtest/help/multtest.rdx
    • /usr/lib/R/library/multtest/help/paths.rds
    • /usr/lib/R/library/multtest/html/00Index.html
    • /usr/lib/R/library/multtest/html/EBMTP-class.html
    • /usr/lib/R/library/multtest/html/EBMTP.html
    • /usr/lib/R/library/multtest/html/Hsets.html
    • /usr/lib/R/library/multtest/html/MTP-class.html
    • /usr/lib/R/library/multtest/html/MTP-methods.html
    • /usr/lib/R/library/multtest/html/MTP.html
    • /usr/lib/R/library/multtest/html/R.css
    • /usr/lib/R/library/multtest/html/boot.null.html
    • /usr/lib/R/library/multtest/html/corr.null.html
    • /usr/lib/R/library/multtest/html/fwer2gfwer.html
    • /usr/lib/R/library/multtest/html/get.index.html
    • /usr/lib/R/library/multtest/html/golub.html
    • /usr/lib/R/library/multtest/html/meanX.html
    • /usr/lib/R/library/multtest/html/mt.internal.html
    • /usr/lib/R/library/multtest/html/mt.maxT.html
    • /usr/lib/R/library/multtest/html/mt.plot.html
    • /usr/lib/R/library/multtest/html/mt.rawp2adjp.html
    • /usr/lib/R/library/multtest/html/mt.reject.html
    • /usr/lib/R/library/multtest/html/mt.sample.teststat.html
    • /usr/lib/R/library/multtest/html/mt.teststat.html
    • /usr/lib/R/library/multtest/html/ss.maxT.html
    • /usr/lib/R/library/multtest/html/wapply.html
    • /usr/lib/R/library/multtest/libs/multtest.so
    • /usr/lib/R/library/multtest/otherDocs/MTP.Rnw
    • /usr/lib/R/library/multtest/otherDocs/MTPALL.Rnw
    • /usr/lib/R/library/multtest/otherDocs/multtest.Rnw
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