R-DESeq-1.14.0-2-rosa2014.1.x86_64.rpm


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Description

R-DESeq - Differential gene expression analysis based on negative binomial distribution

Property Value
Distribution ROSA 2014.1
Repository ROSA Contrib x86_64
Package name R-DESeq
Package version 1.14.0
Package release 2-rosa2014.1
Package architecture x86_64
Package type rpm
Installed size 2.75 MB
Download size 1.97 MB
Official Mirror mirror.rosalab.ru
Estimate variance-mean dependence in count data from high-throughput
sequencing assays and test for differential expression based on a model
using the negative binomial distribution

Alternatives

Package Version Architecture Repository
R-DESeq-1.14.0-2-rosa2014.1.i586.rpm 1.14.0 i586 ROSA Contrib
R-DESeq - - -

Requires

Name Value
R-Biobase -
R-MASS -
R-genefilter -
R-geneplotter -
R-locfit -
R-methods -
R-pasilla -
libR.so()(64bit) -
libc.so.6()(64bit) -
libc.so.6(GLIBC_2.2.5)(64bit) -

Provides

Name Value
DESeq.so()(64bit) -
R-DESeq == 1.14.0-2:2014.1

Download

Type URL
Binary Package R-DESeq-1.14.0-2-rosa2014.1.x86_64.rpm
Source Package R-DESeq-1.14.0-2.src.rpm

Install Howto

  1. Enable ROSA Contrib repository on Install and Remove Software
  2. Update packages list:
    # urpmi.update -a
  3. Install R-DESeq rpm package:
    # urpmi R-DESeq

Files

Path
/usr/lib64/R/library/DESeq/CITATION
/usr/lib64/R/library/DESeq/DESCRIPTION
/usr/lib64/R/library/DESeq/INDEX
/usr/lib64/R/library/DESeq/NAMESPACE
/usr/lib64/R/library/DESeq/NEWS
/usr/lib64/R/library/DESeq/Meta/Rd.rds
/usr/lib64/R/library/DESeq/Meta/hsearch.rds
/usr/lib64/R/library/DESeq/Meta/links.rds
/usr/lib64/R/library/DESeq/Meta/nsInfo.rds
/usr/lib64/R/library/DESeq/Meta/package.rds
/usr/lib64/R/library/DESeq/R/DESeq
/usr/lib64/R/library/DESeq/R/DESeq.rdb
/usr/lib64/R/library/DESeq/R/DESeq.rdx
/usr/lib64/R/library/DESeq/doc/DESeq.R
/usr/lib64/R/library/DESeq/doc/DESeq.Rnw
/usr/lib64/R/library/DESeq/doc/DESeq.bib
/usr/lib64/R/library/DESeq/doc/DESeq.pdf
/usr/lib64/R/library/DESeq/doc/vst.nb
/usr/lib64/R/library/DESeq/doc/vst.pdf
/usr/lib64/R/library/DESeq/doc/whbiocvignette.sty
/usr/lib64/R/library/DESeq/extra/TagSeqExample.tab
/usr/lib64/R/library/DESeq/extra/scvBiasCorrectionFits.rda
/usr/lib64/R/library/DESeq/help/AnIndex
/usr/lib64/R/library/DESeq/help/DESeq.rdb
/usr/lib64/R/library/DESeq/help/DESeq.rdx
/usr/lib64/R/library/DESeq/help/aliases.rds
/usr/lib64/R/library/DESeq/help/paths.rds
/usr/lib64/R/library/DESeq/html/00Index.html
/usr/lib64/R/library/DESeq/html/CountDataSet-class.html
/usr/lib64/R/library/DESeq/html/R.css
/usr/lib64/R/library/DESeq/html/adjustScvForBias.html
/usr/lib64/R/library/DESeq/html/conditions.html
/usr/lib64/R/library/DESeq/html/counts.html
/usr/lib64/R/library/DESeq/html/dispTable.html
/usr/lib64/R/library/DESeq/html/estimateDispersions.html
/usr/lib64/R/library/DESeq/html/estimateSizeFactors.html
/usr/lib64/R/library/DESeq/html/estimateSizeFactorsForMatrix.html
/usr/lib64/R/library/DESeq/html/estimateVarianceFunctions.html
/usr/lib64/R/library/DESeq/html/fitInfo.html
/usr/lib64/R/library/DESeq/html/fitNbinomGLMs.html
/usr/lib64/R/library/DESeq/html/fitNbinomGLMsForMatrix.html
/usr/lib64/R/library/DESeq/html/getBaseMeansAndVariances.html
/usr/lib64/R/library/DESeq/html/getVarianceStabilizedData.html
/usr/lib64/R/library/DESeq/html/makeExampleCountDataSet.html
/usr/lib64/R/library/DESeq/html/nbinomGLMTest.html
/usr/lib64/R/library/DESeq/html/nbinomTest.html
/usr/lib64/R/library/DESeq/html/nbinomTestForMatrices.html
/usr/lib64/R/library/DESeq/html/nbkd.sf.html
/usr/lib64/R/library/DESeq/html/newCountDataSet.html
/usr/lib64/R/library/DESeq/html/newCountDataSetFromHTSeqCount.html
/usr/lib64/R/library/DESeq/html/plotDispEsts.html
/usr/lib64/R/library/DESeq/html/plotMA.html
/usr/lib64/R/library/DESeq/html/plotPCA.html
/usr/lib64/R/library/DESeq/html/residualsEcdfPlot.html
/usr/lib64/R/library/DESeq/html/scvPlot.html
/usr/lib64/R/library/DESeq/html/sizeFactors.html
/usr/lib64/R/library/DESeq/html/varianceFitDiagnostics.html
/usr/lib64/R/library/DESeq/libs/DESeq.so
/usr/lib64/R/library/DESeq/scripts/testVarianceStabilizingTransformation.R

Changelog

2014-07-25 - Denis Silakov <denis.silakov@rosalab.ru> 1.14.0-2
+ Revision: 83bcba0
- MassBuild#464: Increase release tag

See Also

Package Description
R-DEXSeq-1.8.0-3-rosa2014.1.x86_64.rpm Inference of differential exon usage in RNA-Seq
R-DEoptimR-1.0.1-2-rosa2014.1.noarch.rpm Differential Evolution Optimization in pure R
R-Deducer-0.7.6.1-2-rosa2014.1.noarch.rpm Deducer
R-DynDoc-1.40.0-2-rosa2014.1.noarch.rpm Dynamic document tools
R-EBImage-4.4.0-2-rosa2014.1.x86_64.rpm Image processing toolbox for R
R-ENmisc-1.2.7-2-rosa2014.1.noarch.rpm Neuwirth miscellaenous
R-EatonEtAlChIPseq-0.0.5-3-rosa2014.1.noarch.rpm ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010
R-Ecdat-0.2.4-2-rosa2014.1.noarch.rpm Data sets for econometrics
R-FDb.UCSC.tRNAs-1.0.0-1-rosa2014.1.noarch.rpm Annotation package for FeatureDb object(s)
R-FRB-1.8-2-rosa2014.1.noarch.rpm Fast and Robust Bootstrap
R-Fahrmeir-2012.04.0-2-rosa2014.1.noarch.rpm Multivariate Statistical Modelling Based on Generalized Linear Models data
R-Formula-1.1.1-2-rosa2014.1.x86_64.rpm Extended Model Formulas
R-GAMBoost-1.2.3-2-rosa2014.1.x86_64.rpm Generalized linear and additive models by likelihood based boosting
R-GEOquery-2.28.0-2-rosa2014.1.x86_64.rpm Get data from NCBI Gene Expression Omnibus (GEO)
R-GO.db-2.10.1-2-rosa2014.1.noarch.rpm A set of annotation maps describing the entire Gene Ontology
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