R-DESeq-1.14.0-2-rosa2014.1.x86_64.rpm


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Description

R-DESeq - Differential gene expression analysis based on negative binomial distribution

Distribution: ROSA 2014.1
Repository: ROSA Contrib x86_64
Package name: R-DESeq
Package version: 1.14.0
Package release: 2-rosa2014.1
Package architecture: x86_64
Package type: rpm
Installed size: 2.75 MB
Download size: 1.97 MB
Official Mirror: mirror.rosalab.ru
Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution

Alternatives

Provides

  • DESeq.so()(64bit)
  • R-DESeq == 1.14.0-2:2014.1

    Download

    Install Howto

    1. Enable ROSA Contrib repository on Install and Remove Software"
    2. Update packages list:
      # urpmi.update -a
    3. Install R-DESeq rpm package:
      # urpmi R-DESeq

    Files

    • /usr/lib64/R/library/DESeq/CITATION
    • /usr/lib64/R/library/DESeq/DESCRIPTION
    • /usr/lib64/R/library/DESeq/INDEX
    • /usr/lib64/R/library/DESeq/NAMESPACE
    • /usr/lib64/R/library/DESeq/NEWS
    • /usr/lib64/R/library/DESeq/Meta/Rd.rds
    • /usr/lib64/R/library/DESeq/Meta/hsearch.rds
    • /usr/lib64/R/library/DESeq/Meta/links.rds
    • /usr/lib64/R/library/DESeq/Meta/nsInfo.rds
    • /usr/lib64/R/library/DESeq/Meta/package.rds
    • /usr/lib64/R/library/DESeq/R/DESeq
    • /usr/lib64/R/library/DESeq/R/DESeq.rdb
    • /usr/lib64/R/library/DESeq/R/DESeq.rdx
    • /usr/lib64/R/library/DESeq/doc/DESeq.R
    • /usr/lib64/R/library/DESeq/doc/DESeq.Rnw
    • /usr/lib64/R/library/DESeq/doc/DESeq.bib
    • /usr/lib64/R/library/DESeq/doc/DESeq.pdf
    • /usr/lib64/R/library/DESeq/doc/vst.nb
    • /usr/lib64/R/library/DESeq/doc/vst.pdf
    • /usr/lib64/R/library/DESeq/doc/whbiocvignette.sty
    • /usr/lib64/R/library/DESeq/extra/TagSeqExample.tab
    • /usr/lib64/R/library/DESeq/extra/scvBiasCorrectionFits.rda
    • /usr/lib64/R/library/DESeq/help/AnIndex
    • /usr/lib64/R/library/DESeq/help/DESeq.rdb
    • /usr/lib64/R/library/DESeq/help/DESeq.rdx
    • /usr/lib64/R/library/DESeq/help/aliases.rds
    • /usr/lib64/R/library/DESeq/help/paths.rds
    • /usr/lib64/R/library/DESeq/html/00Index.html
    • /usr/lib64/R/library/DESeq/html/CountDataSet-class.html
    • /usr/lib64/R/library/DESeq/html/R.css
    • /usr/lib64/R/library/DESeq/html/adjustScvForBias.html
    • /usr/lib64/R/library/DESeq/html/conditions.html
    • /usr/lib64/R/library/DESeq/html/counts.html
    • /usr/lib64/R/library/DESeq/html/dispTable.html
    • /usr/lib64/R/library/DESeq/html/estimateDispersions.html
    • /usr/lib64/R/library/DESeq/html/estimateSizeFactors.html
    • /usr/lib64/R/library/DESeq/html/estimateSizeFactorsForMatrix.html
    • /usr/lib64/R/library/DESeq/html/estimateVarianceFunctions.html
    • /usr/lib64/R/library/DESeq/html/fitInfo.html
    • /usr/lib64/R/library/DESeq/html/fitNbinomGLMs.html
    • /usr/lib64/R/library/DESeq/html/fitNbinomGLMsForMatrix.html
    • /usr/lib64/R/library/DESeq/html/getBaseMeansAndVariances.html
    • /usr/lib64/R/library/DESeq/html/getVarianceStabilizedData.html
    • /usr/lib64/R/library/DESeq/html/makeExampleCountDataSet.html
    • /usr/lib64/R/library/DESeq/html/nbinomGLMTest.html
    • /usr/lib64/R/library/DESeq/html/nbinomTest.html
    • /usr/lib64/R/library/DESeq/html/nbinomTestForMatrices.html
    • /usr/lib64/R/library/DESeq/html/nbkd.sf.html
    • /usr/lib64/R/library/DESeq/html/newCountDataSet.html
    • /usr/lib64/R/library/DESeq/html/newCountDataSetFromHTSeqCount.html
    • /usr/lib64/R/library/DESeq/html/plotDispEsts.html
    • /usr/lib64/R/library/DESeq/html/plotMA.html
    • /usr/lib64/R/library/DESeq/html/plotPCA.html
    • /usr/lib64/R/library/DESeq/html/residualsEcdfPlot.html
    • /usr/lib64/R/library/DESeq/html/scvPlot.html
    • /usr/lib64/R/library/DESeq/html/sizeFactors.html
    • /usr/lib64/R/library/DESeq/html/varianceFitDiagnostics.html
    • /usr/lib64/R/library/DESeq/libs/DESeq.so
    • /usr/lib64/R/library/DESeq/scripts/testVarianceStabilizingTransformation.R

    Changelog

    2014-07-25 - Denis Silakov <denis.silakov@rosalab.ru> 1.14.0-2 + Revision: 83bcba0 - MassBuild#464: Increase release tag

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