R-ape-3.1.2-2-rosa2014.1.x86_64.rpm


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Description

R-ape - Analyses of Phylogenetics and Evolution

Property Value
Distribution ROSA 2014.1
Repository ROSA Contrib x86_64
Package name R-ape
Package version 3.1.2
Package release 2-rosa2014.1
Package architecture x86_64
Package type rpm
Installed size 2.02 MB
Download size 1.31 MB
Official Mirror mirror.rosalab.ru
ape provides functions for reading, writing, plotting, and manipulating
phylogenetic trees, analyses of comparative data in a phylogenetic
framework, analyses of diversification and macroevolution, computing
distances from allelic and nucleotide data, reading nucleotide sequences,
and several tools such as Mantel's test, computation of minimum spanning
tree, generalized skyline plots, estimation of absolute evolutionary rates
and clock-like trees using mean path lengths, non-parametric rate
smoothing and penalized likelihood. Phylogeny estimation can be done with
the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods
handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the
corresponding triangle method).

Alternatives

Package Version Architecture Repository
R-ape-3.1.2-2-rosa2014.1.i586.rpm 3.1.2 i586 ROSA Contrib
R-ape - - -

Requires

Name Value
R-expm -
R-gee -
R-lattice -
R-nlme -
libR.so()(64bit) -
libc.so.6()(64bit) -
libc.so.6(GLIBC_2.14)(64bit) -
libc.so.6(GLIBC_2.2.5)(64bit) -
libc.so.6(GLIBC_2.3.4)(64bit) -
libc.so.6(GLIBC_2.4)(64bit) -
liblapack.so.3()(64bit) -
libm.so.6()(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -

Provides

Name Value
R-ape == 3.1.2-2:2014.1
ape.so()(64bit) -

Download

Type URL
Binary Package R-ape-3.1.2-2-rosa2014.1.x86_64.rpm
Source Package R-ape-3.1.2-2.src.rpm

Install Howto

  1. Enable ROSA Contrib repository on Install and Remove Software
  2. Update packages list:
    # urpmi.update -a
  3. Install R-ape rpm package:
    # urpmi R-ape

Files

Path
/usr/lib64/R/library/ape/CITATION
/usr/lib64/R/library/ape/DESCRIPTION
/usr/lib64/R/library/ape/INDEX
/usr/lib64/R/library/ape/NAMESPACE
/usr/lib64/R/library/ape/NEWS
/usr/lib64/R/library/ape/Meta/Rd.rds
/usr/lib64/R/library/ape/Meta/data.rds
/usr/lib64/R/library/ape/Meta/hsearch.rds
/usr/lib64/R/library/ape/Meta/links.rds
/usr/lib64/R/library/ape/Meta/nsInfo.rds
/usr/lib64/R/library/ape/Meta/package.rds
/usr/lib64/R/library/ape/Meta/vignette.rds
/usr/lib64/R/library/ape/R/ape
/usr/lib64/R/library/ape/R/ape.rdb
/usr/lib64/R/library/ape/R/ape.rdx
/usr/lib64/R/library/ape/data/HP.links.rda
/usr/lib64/R/library/ape/data/bird.families.rda
/usr/lib64/R/library/ape/data/bird.orders.rda
/usr/lib64/R/library/ape/data/carnivora.csv.gz
/usr/lib64/R/library/ape/data/chiroptera.rda
/usr/lib64/R/library/ape/data/cynipids.rda
/usr/lib64/R/library/ape/data/gopher.D.rda
/usr/lib64/R/library/ape/data/hivtree.newick.rda
/usr/lib64/R/library/ape/data/hivtree.table.txt.gz
/usr/lib64/R/library/ape/data/landplants.newick.rda
/usr/lib64/R/library/ape/data/lice.D.rda
/usr/lib64/R/library/ape/data/lmorigin.ex1.rda
/usr/lib64/R/library/ape/data/lmorigin.ex2.rda
/usr/lib64/R/library/ape/data/mat3.RData
/usr/lib64/R/library/ape/data/mat5M3ID.RData
/usr/lib64/R/library/ape/data/mat5Mrand.RData
/usr/lib64/R/library/ape/data/opsin.newick.rda
/usr/lib64/R/library/ape/data/woodmouse.rda
/usr/lib64/R/library/ape/doc/MoranI.R
/usr/lib64/R/library/ape/doc/MoranI.Rnw
/usr/lib64/R/library/ape/doc/MoranI.pdf
/usr/lib64/R/library/ape/doc/index.html
/usr/lib64/R/library/ape/help/AnIndex
/usr/lib64/R/library/ape/help/aliases.rds
/usr/lib64/R/library/ape/help/ape.rdb
/usr/lib64/R/library/ape/help/ape.rdx
/usr/lib64/R/library/ape/help/paths.rds
/usr/lib64/R/library/ape/html/00Index.html
/usr/lib64/R/library/ape/html/CADM.global.html
/usr/lib64/R/library/ape/html/DNAbin.html
/usr/lib64/R/library/ape/html/Initialize.corPhyl.html
/usr/lib64/R/library/ape/html/LTT.html
/usr/lib64/R/library/ape/html/MPR.html
/usr/lib64/R/library/ape/html/MoranI.html
/usr/lib64/R/library/ape/html/R.css
/usr/lib64/R/library/ape/html/SDM.html
/usr/lib64/R/library/ape/html/ace.html
/usr/lib64/R/library/ape/html/add.scale.bar.html
/usr/lib64/R/library/ape/html/additive.html
/usr/lib64/R/library/ape/html/alex.html
/usr/lib64/R/library/ape/html/all.equal.phylo.html
/usr/lib64/R/library/ape/html/ape-internal.html
/usr/lib64/R/library/ape/html/ape-package.html
/usr/lib64/R/library/ape/html/as.alignment.html
/usr/lib64/R/library/ape/html/as.bitsplits.html
/usr/lib64/R/library/ape/html/as.matching.html
/usr/lib64/R/library/ape/html/as.phylo.formula.html
/usr/lib64/R/library/ape/html/as.phylo.html
/usr/lib64/R/library/ape/html/axisPhylo.html
/usr/lib64/R/library/ape/html/balance.html
/usr/lib64/R/library/ape/html/base.freq.html
/usr/lib64/R/library/ape/html/bd.ext.html
/usr/lib64/R/library/ape/html/bd.time.html
/usr/lib64/R/library/ape/html/bind.tree.html
/usr/lib64/R/library/ape/html/bionj.html
/usr/lib64/R/library/ape/html/bird.families.html
/usr/lib64/R/library/ape/html/bird.orders.html
/usr/lib64/R/library/ape/html/birthdeath.html
/usr/lib64/R/library/ape/html/boot.phylo.html
/usr/lib64/R/library/ape/html/branching.times.html
/usr/lib64/R/library/ape/html/c.phylo.html
/usr/lib64/R/library/ape/html/carnivora.html
/usr/lib64/R/library/ape/html/cherry.html
/usr/lib64/R/library/ape/html/chiroptera.html
/usr/lib64/R/library/ape/html/chronoMPL.html
/usr/lib64/R/library/ape/html/chronopl.html
/usr/lib64/R/library/ape/html/chronos.html
/usr/lib64/R/library/ape/html/clustal.html
/usr/lib64/R/library/ape/html/coalescent.intervals.html
/usr/lib64/R/library/ape/html/collapse.singles.html
/usr/lib64/R/library/ape/html/collapsed.intervals.html
/usr/lib64/R/library/ape/html/compar.cheverud.html
/usr/lib64/R/library/ape/html/compar.gee.html
/usr/lib64/R/library/ape/html/compar.lynch.html
/usr/lib64/R/library/ape/html/compar.ou.html
/usr/lib64/R/library/ape/html/compute.brlen.html
/usr/lib64/R/library/ape/html/compute.brtime.html
/usr/lib64/R/library/ape/html/consensus.html
/usr/lib64/R/library/ape/html/cophenetic.phylo.html
/usr/lib64/R/library/ape/html/cophyloplot.html
/usr/lib64/R/library/ape/html/corBlomberg.html
/usr/lib64/R/library/ape/html/corBrownian.html
/usr/lib64/R/library/ape/html/corClasses.html
/usr/lib64/R/library/ape/html/corGrafen.html
/usr/lib64/R/library/ape/html/corMartins.html
/usr/lib64/R/library/ape/html/corPagel.html
/usr/lib64/R/library/ape/html/correlogram.formula.html
/usr/lib64/R/library/ape/html/cynipids.html
/usr/lib64/R/library/ape/html/dbd.html
/usr/lib64/R/library/ape/html/del.gaps.html
/usr/lib64/R/library/ape/html/delta.plot.html
/usr/lib64/R/library/ape/html/dist.dna.html
/usr/lib64/R/library/ape/html/dist.gene.html
/usr/lib64/R/library/ape/html/dist.topo.html
/usr/lib64/R/library/ape/html/diversi.gof.html
/usr/lib64/R/library/ape/html/diversi.time.html
/usr/lib64/R/library/ape/html/diversity.contrast.test.html
/usr/lib64/R/library/ape/html/drop.tip.html
/usr/lib64/R/library/ape/html/edges.html
/usr/lib64/R/library/ape/html/evonet.html
/usr/lib64/R/library/ape/html/ewLasso.html
/usr/lib64/R/library/ape/html/fastme.html
/usr/lib64/R/library/ape/html/gammaStat.html
/usr/lib64/R/library/ape/html/hivtree.html
/usr/lib64/R/library/ape/html/howmanytrees.html
/usr/lib64/R/library/ape/html/identify.phylo.html
/usr/lib64/R/library/ape/html/image.DNAbin.html
/usr/lib64/R/library/ape/html/is.binary.tree.html
/usr/lib64/R/library/ape/html/is.compatible.html
/usr/lib64/R/library/ape/html/is.monophyletic.html
/usr/lib64/R/library/ape/html/is.ultrametric.html
/usr/lib64/R/library/ape/html/kronoviz.html
/usr/lib64/R/library/ape/html/ladderize.html
/usr/lib64/R/library/ape/html/landplants.html
/usr/lib64/R/library/ape/html/lmorigin.html
/usr/lib64/R/library/ape/html/ltt.plot.html
/usr/lib64/R/library/ape/html/makeLabel.html
/usr/lib64/R/library/ape/html/makeNodeLabel.html
/usr/lib64/R/library/ape/html/mantel.test.html
/usr/lib64/R/library/ape/html/mat3.html
/usr/lib64/R/library/ape/html/mat5M3ID.html
/usr/lib64/R/library/ape/html/mat5Mrand.html
/usr/lib64/R/library/ape/html/matexpo.html
/usr/lib64/R/library/ape/html/mcconwaysims.test.html
/usr/lib64/R/library/ape/html/mcmc.popsize.html
/usr/lib64/R/library/ape/html/mixedFontLabel.html
/usr/lib64/R/library/ape/html/mrca.html
/usr/lib64/R/library/ape/html/mst.html
/usr/lib64/R/library/ape/html/multi2di.html
/usr/lib64/R/library/ape/html/multiphylo.html
/usr/lib64/R/library/ape/html/mvr.html
/usr/lib64/R/library/ape/html/nj.html
/usr/lib64/R/library/ape/html/njs.html
/usr/lib64/R/library/ape/html/node.depth.html
/usr/lib64/R/library/ape/html/nodelabels.html
/usr/lib64/R/library/ape/html/opsin.html
/usr/lib64/R/library/ape/html/parafit.html
/usr/lib64/R/library/ape/html/pcoa.html
/usr/lib64/R/library/ape/html/phydataplot.html
/usr/lib64/R/library/ape/html/phymltest.html
/usr/lib64/R/library/ape/html/pic.html
/usr/lib64/R/library/ape/html/pic.ortho.html
/usr/lib64/R/library/ape/html/plot.correlogram.html
/usr/lib64/R/library/ape/html/plot.phylo.html
/usr/lib64/R/library/ape/html/plot.varcomp.html
/usr/lib64/R/library/ape/html/print.phylo.html
/usr/lib64/R/library/ape/html/rTraitCont.html
/usr/lib64/R/library/ape/html/rTraitDisc.html
/usr/lib64/R/library/ape/html/rTraitMult.html
/usr/lib64/R/library/ape/html/read.GenBank.html
/usr/lib64/R/library/ape/html/read.caic.html
/usr/lib64/R/library/ape/html/read.dna.html
/usr/lib64/R/library/ape/html/read.nexus.data.html
/usr/lib64/R/library/ape/html/read.nexus.html
/usr/lib64/R/library/ape/html/read.tree.html
/usr/lib64/R/library/ape/html/reorder.phylo.html
/usr/lib64/R/library/ape/html/richness.yule.test.html
/usr/lib64/R/library/ape/html/rlineage.html
/usr/lib64/R/library/ape/html/root.html
/usr/lib64/R/library/ape/html/rotate.html
/usr/lib64/R/library/ape/html/rtree.html
/usr/lib64/R/library/ape/html/seg.sites.html
/usr/lib64/R/library/ape/html/skyline.html
/usr/lib64/R/library/ape/html/skylineplot.html
/usr/lib64/R/library/ape/html/slowinskiguyer.test.html
/usr/lib64/R/library/ape/html/speciesTree.html
/usr/lib64/R/library/ape/html/stree.html
/usr/lib64/R/library/ape/html/subtreeplot.html
/usr/lib64/R/library/ape/html/subtrees.html
/usr/lib64/R/library/ape/html/summary.phylo.html
/usr/lib64/R/library/ape/html/treePop.html
/usr/lib64/R/library/ape/html/trex.html
/usr/lib64/R/library/ape/html/triangMtd.html
/usr/lib64/R/library/ape/html/unique.multiPhylo.html
/usr/lib64/R/library/ape/html/varCompPhylip.html
/usr/lib64/R/library/ape/html/varcomp.html
/usr/lib64/R/library/ape/html/vcv.phylo.html
/usr/lib64/R/library/ape/html/weight.taxo.html
/usr/lib64/R/library/ape/html/where.html
/usr/lib64/R/library/ape/html/which.edge.html
/usr/lib64/R/library/ape/html/woodmouse.html
/usr/lib64/R/library/ape/html/write.dna.html
/usr/lib64/R/library/ape/html/write.nexus.data.html
/usr/lib64/R/library/ape/html/write.nexus.html
/usr/lib64/R/library/ape/html/write.tree.html
/usr/lib64/R/library/ape/html/yule.cov.html
/usr/lib64/R/library/ape/html/yule.html
/usr/lib64/R/library/ape/html/yule.time.html
/usr/lib64/R/library/ape/html/zoom.html
/usr/lib64/R/library/ape/libs/ape.so

Changelog

2014-07-25 - Denis Silakov <denis.silakov@rosalab.ru> 3.1.2-2
+ Revision: c1d2835
- MassBuild#464: Increase release tag

See Also

Package Description
R-aplpack-1.2.9-2-rosa2014.1.x86_64.rpm Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, slider functions
R-arm-1.6.10-2-rosa2014.1.noarch.rpm Data Analysis Using Regression and Multilevel/Hierarchical Models
R-arules-1.1.3-2-rosa2014.1.x86_64.rpm Mining Association Rules and Frequent Itemsets
R-arulesViz-0.1.9-2-rosa2014.1.x86_64.rpm arulesViz - Visualizing Association Rules and Frequent Itemsets
R-base64enc-0.1.2-1-rosa2014.1.x86_64.rpm Tools for base64 encoding
R-bdsmatrix-1.3.1-3-rosa2014.1.x86_64.rpm Routines for Block Diagonal Symmetric matrices
R-biclust-1.0.2-3-rosa2014.1.x86_64.rpm BiCluster Algorithms
R-biglm-0.9.1-2-rosa2014.1.x86_64.rpm bounded memory linear and generalized linear models
R-biomaRt-2.18.0-2-rosa2014.1.x86_64.rpm Interface to BioMart databases (e.g. Ensembl, COSMIC ,Wormbase and Gramene)
R-bitops-1.0.6-2-rosa2014.1.x86_64.rpm Functions for Bitwise operations
R-boot-1.3.10-2-rosa2014.1.noarch.rpm Bootstrap Functions (originally by Angelo Canty for S)
R-brew-1.0.6-1-rosa2014.1.x86_64.rpm Templating Framework for Report Generation
R-brglm-0.5.9-1-rosa2014.1.x86_64.rpm Bias reduction in binomial-response generalized linear models
R-ca-0.53-2-rosa2014.1.noarch.rpm Simple, Multiple and Joint Correspondence Analysis
R-caTools-1.16-2-rosa2014.1.x86_64.rpm Tools: moving window statistics, GIF, Base64, ROC AUC, etc
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