R-pasillaBamSubset-0.3.0-1-rosa2014.1.x86_64.rpm


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Description

R-pasillaBamSubset - Subset of BAM files from "Pasilla" experiment

Property Value
Distribution ROSA 2014.1
Repository ROSA Contrib x86_64
Package name R-pasillaBamSubset
Package version 0.3.0
Package release 1-rosa2014.1
Package architecture x86_64
Package type rpm
Installed size 15.94 MB
Download size 14.97 MB
Official Mirror mirror.rosalab.ru
Subset of BAM files from "Pasilla" experiment.
Bioconductor version: Development (3.0).
Subset of BAM files untreated1.bam (single-end reads) and
untreated3.bam (paired-end reads) from "Pasilla" experiment
(Pasilla knock-down by Brooks et al., Genome Research 2011).
See the vignette in the pasilla data package for how BAM
files untreated1.bam and untreated3.bam were obtained from
the RNA-Seq read sequence data that is provided by NCBI
Gene Expression Omnibus under accession numbers GSM461176
to GSM461181. Also contains the DNA sequence for fly
chromosome 4 to which the reads can be mapped.

Alternatives

Package Version Architecture Repository
R-pasillaBamSubset-0.3.0-1-rosa2014.1.i586.rpm 0.3.0 i586 ROSA Contrib
R-pasillaBamSubset - - -

Provides

Name Value
R-pasillaBamSubset == 0.3.0-1:2014.1

Download

Type URL
Binary Package R-pasillaBamSubset-0.3.0-1-rosa2014.1.x86_64.rpm
Source Package R-pasillaBamSubset-0.3.0-1.src.rpm

Install Howto

  1. Enable ROSA Contrib repository on Install and Remove Software"
  2. Update packages list:
    # urpmi.update -a
  3. Install R-pasillaBamSubset rpm package:
    # urpmi R-pasillaBamSubset

Files

Path
/usr/lib64/R/library/pasillaBamSubset/DESCRIPTION
/usr/lib64/R/library/pasillaBamSubset/INDEX
/usr/lib64/R/library/pasillaBamSubset/NAMESPACE
/usr/lib64/R/library/pasillaBamSubset/Meta/Rd.rds
/usr/lib64/R/library/pasillaBamSubset/Meta/hsearch.rds
/usr/lib64/R/library/pasillaBamSubset/Meta/links.rds
/usr/lib64/R/library/pasillaBamSubset/Meta/nsInfo.rds
/usr/lib64/R/library/pasillaBamSubset/Meta/package.rds
/usr/lib64/R/library/pasillaBamSubset/R/pasillaBamSubset
/usr/lib64/R/library/pasillaBamSubset/R/pasillaBamSubset.rdb
/usr/lib64/R/library/pasillaBamSubset/R/pasillaBamSubset.rdx
/usr/lib64/R/library/pasillaBamSubset/extdata/dm3_chr4.fa
/usr/lib64/R/library/pasillaBamSubset/extdata/untreated1_chr4.bam
/usr/lib64/R/library/pasillaBamSubset/extdata/untreated1_chr4.bam.bai
/usr/lib64/R/library/pasillaBamSubset/extdata/untreated3_chr4.bam
/usr/lib64/R/library/pasillaBamSubset/extdata/untreated3_chr4.bam.bai
/usr/lib64/R/library/pasillaBamSubset/help/AnIndex
/usr/lib64/R/library/pasillaBamSubset/help/aliases.rds
/usr/lib64/R/library/pasillaBamSubset/help/pasillaBamSubset.rdb
/usr/lib64/R/library/pasillaBamSubset/help/pasillaBamSubset.rdx
/usr/lib64/R/library/pasillaBamSubset/help/paths.rds
/usr/lib64/R/library/pasillaBamSubset/html/00Index.html
/usr/lib64/R/library/pasillaBamSubset/html/R.css
/usr/lib64/R/library/pasillaBamSubset/html/pasillaBamSubset-package.html

Changelog

2014-09-17 - Denis Silakov <denis.silakov@rosalab.ru> 0.3.0-1
+ Revision: 0861edf
- Added tarball

See Also

Package Description
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R-pbkrtest-0.3.7-2-rosa2014.1.x86_64.rpm Parametric bootstrap and Kenward Roger based methods for mixed model comparison
R-pcaPP-1.9.49-2-rosa2014.1.x86_64.rpm Robust PCA by Projection Pursuit
R-penalized-0.9.42-3-rosa2014.1.x86_64.rpm L1 and L2 penalized estimation in GLMs and in the Cox model
R-pkgDepTools-1.28.0-2-rosa2014.1.x86_64.rpm Package Dependency Tools
R-playwith-0.9.54-3-rosa2014.1.x86_64.rpm A GUI for interactive plots using GTK+
R-plm-1.4.0-2-rosa2014.1.x86_64.rpm Linear Models for Panel Data
R-plotmo-1.3.3-2-rosa2014.1.noarch.rpm Plot a model's response while varying the values of the predictors
R-plotrix-3.5.7-1-rosa2014.1.noarch.rpm Various plotting functions
R-pls-2.4.3-1-rosa2014.1.noarch.rpm Partial Least Squares and Principal Component regression
R-plyr-1.8.1-1-rosa2014.1.x86_64.rpm Tools for splitting, applying and combining data
R-pmml-1.4.1-2-rosa2014.1.noarch.rpm Generate PMML for various models
R-pmmlTransformations-1.2.1-3-rosa2014.1.noarch.rpm Transforms input data from a PMML perspective
R-png-0.1.7-3-rosa2014.1.x86_64.rpm Read and write PNG images
R-poLCA-1.4.1-2-rosa2014.1.x86_64.rpm Polytomous variable Latent Class Analysis
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