R-rtracklayer-1.22.3-2-rosa2014.1.x86_64.rpm


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Description

R-rtracklayer - R interface to genome browsers and their annotation tracks

Property Value
Distribution ROSA 2014.1
Repository ROSA Contrib x86_64
Package name R-rtracklayer
Package version 1.22.3
Package release 2-rosa2014.1
Package architecture x86_64
Package type rpm
Installed size 2.66 MB
Download size 1.71 MB
Official Mirror mirror.rosalab.ru
Extensible framework for interacting with multiple genome browsers
(currently UCSC built-in) and manipulating annotation tracks in various
formats (currently GFF, BED, bedGraph, BED15, WIG, and BigWig built-in).
The user may export/import tracks to/from the supported browsers, as well
as query and modify the browser state, such as the current viewport.

Alternatives

Package Version Architecture Repository
R-rtracklayer-1.28.6-1-rosa2014.1.i586.rpm 1.28.6 i586 ROSA Contrib Updates
R-rtracklayer-1.28.6-1-rosa2014.1.x86_64.rpm 1.28.6 x86_64 ROSA Contrib Updates
R-rtracklayer-1.22.3-2-rosa2014.1.i586.rpm 1.22.3 i586 ROSA Contrib
R-rtracklayer - - -

Requires

Name Value
R-BSgenome -
R-BSgenome.Hsapiens.UCSC.hg19 -
R-BiocGenerics -
R-Biostrings -
R-GenomicRanges -
R-IRanges -
R-RCurl -
R-Rsamtools -
R-TxDb.Hsapiens.UCSC.hg19.knownGene -
R-XML -
R-genefilter -
R-hgu133plus2.db -
R-humanStemCell -
R-limma -
R-methods -
R-microRNA -
R-org.Hs.eg.db -
R-zlibbioc -
libR.so()(64bit) -
libc.so.6()(64bit) -
libc.so.6(GLIBC_2.14)(64bit) -
libc.so.6(GLIBC_2.15)(64bit) -
libc.so.6(GLIBC_2.2.5)(64bit) -
libc.so.6(GLIBC_2.3)(64bit) -
libc.so.6(GLIBC_2.3.4)(64bit) -
libc.so.6(GLIBC_2.4)(64bit) -
libc.so.6(GLIBC_2.7)(64bit) -
libpthread.so.0()(64bit) -
libpthread.so.0(GLIBC_2.2.5)(64bit) -
libz.so.1()(64bit) -

Provides

Name Value
R-rtracklayer == 1.22.3-2:2014.1
rtracklayer.so()(64bit) -

Download

Type URL
Binary Package R-rtracklayer-1.22.3-2-rosa2014.1.x86_64.rpm
Source Package R-rtracklayer-1.22.3-2.src.rpm

Install Howto

  1. Enable ROSA Contrib repository on Install and Remove Software"
  2. Update packages list:
    # urpmi.update -a
  3. Install R-rtracklayer rpm package:
    # urpmi R-rtracklayer

Files

Path
/usr/lib64/R/library/rtracklayer/CITATION
/usr/lib64/R/library/rtracklayer/DESCRIPTION
/usr/lib64/R/library/rtracklayer/INDEX
/usr/lib64/R/library/rtracklayer/NAMESPACE
/usr/lib64/R/library/rtracklayer/NEWS
/usr/lib64/R/library/rtracklayer/Meta/Rd.rds
/usr/lib64/R/library/rtracklayer/Meta/data.rds
/usr/lib64/R/library/rtracklayer/Meta/demo.rds
/usr/lib64/R/library/rtracklayer/Meta/hsearch.rds
/usr/lib64/R/library/rtracklayer/Meta/links.rds
/usr/lib64/R/library/rtracklayer/Meta/nsInfo.rds
/usr/lib64/R/library/rtracklayer/Meta/package.rds
/usr/lib64/R/library/rtracklayer/R/rtracklayer
/usr/lib64/R/library/rtracklayer/R/rtracklayer.rdb
/usr/lib64/R/library/rtracklayer/R/rtracklayer.rdx
/usr/lib64/R/library/rtracklayer/data/cpneTrack.rda
/usr/lib64/R/library/rtracklayer/data/targets.rda
/usr/lib64/R/library/rtracklayer/demo/targets.R
/usr/lib64/R/library/rtracklayer/doc/example.bed
/usr/lib64/R/library/rtracklayer/doc/rtracklayer.R
/usr/lib64/R/library/rtracklayer/doc/rtracklayer.Rnw
/usr/lib64/R/library/rtracklayer/doc/rtracklayer.pdf
/usr/lib64/R/library/rtracklayer/extdata/demo.narrowPeak.gz
/usr/lib64/R/library/rtracklayer/help/AnIndex
/usr/lib64/R/library/rtracklayer/help/aliases.rds
/usr/lib64/R/library/rtracklayer/help/paths.rds
/usr/lib64/R/library/rtracklayer/help/rtracklayer.rdb
/usr/lib64/R/library/rtracklayer/help/rtracklayer.rdx
/usr/lib64/R/library/rtracklayer/html/00Index.html
/usr/lib64/R/library/rtracklayer/html/BEDFile-class.html
/usr/lib64/R/library/rtracklayer/html/BamFile-methods.html
/usr/lib64/R/library/rtracklayer/html/Bed15TrackLine-class.html
/usr/lib64/R/library/rtracklayer/html/BigWigFile.html
/usr/lib64/R/library/rtracklayer/html/BigWigSelection-class.html
/usr/lib64/R/library/rtracklayer/html/BrowserViewList-class.html
/usr/lib64/R/library/rtracklayer/html/Chain-class.html
/usr/lib64/R/library/rtracklayer/html/FastaFile-class.html
/usr/lib64/R/library/rtracklayer/html/GFFFile-class.html
/usr/lib64/R/library/rtracklayer/html/GRangesForUCSCGenome.html
/usr/lib64/R/library/rtracklayer/html/GenomicSelection.html
/usr/lib64/R/library/rtracklayer/html/Quickload-class.html
/usr/lib64/R/library/rtracklayer/html/QuickloadGenome-class.html
/usr/lib64/R/library/rtracklayer/html/R.css
/usr/lib64/R/library/rtracklayer/html/RTLFile-class.html
/usr/lib64/R/library/rtracklayer/html/RangedData-methods.html
/usr/lib64/R/library/rtracklayer/html/RangesList-methods.html
/usr/lib64/R/library/rtracklayer/html/TabixFile-methods.html
/usr/lib64/R/library/rtracklayer/html/TrackDb-class.html
/usr/lib64/R/library/rtracklayer/html/TwoBitFile-class.html
/usr/lib64/R/library/rtracklayer/html/UCSCData-class.html
/usr/lib64/R/library/rtracklayer/html/UCSCFile-class.html
/usr/lib64/R/library/rtracklayer/html/UCSCSchema-class.html
/usr/lib64/R/library/rtracklayer/html/UCSCTableQuery-class.html
/usr/lib64/R/library/rtracklayer/html/WIGFile-class.html
/usr/lib64/R/library/rtracklayer/html/activeView-methods.html
/usr/lib64/R/library/rtracklayer/html/asBED.html
/usr/lib64/R/library/rtracklayer/html/asGFF.html
/usr/lib64/R/library/rtracklayer/html/basicTrackLine-class.html
/usr/lib64/R/library/rtracklayer/html/blocks-methods.html
/usr/lib64/R/library/rtracklayer/html/browseGenome.html
/usr/lib64/R/library/rtracklayer/html/browserSession-class.html
/usr/lib64/R/library/rtracklayer/html/browserSession-methods.html
/usr/lib64/R/library/rtracklayer/html/browserView-class.html
/usr/lib64/R/library/rtracklayer/html/browserView-methods.html
/usr/lib64/R/library/rtracklayer/html/browserViews-methods.html
/usr/lib64/R/library/rtracklayer/html/cpneTrack.html
/usr/lib64/R/library/rtracklayer/html/export.html
/usr/lib64/R/library/rtracklayer/html/genomeBrowsers.html
/usr/lib64/R/library/rtracklayer/html/laySequence-methods.html
/usr/lib64/R/library/rtracklayer/html/layTrack-methods.html
/usr/lib64/R/library/rtracklayer/html/liftOver.html
/usr/lib64/R/library/rtracklayer/html/targets.html
/usr/lib64/R/library/rtracklayer/html/tracks-methods.html
/usr/lib64/R/library/rtracklayer/html/ucscGenomes.html
/usr/lib64/R/library/rtracklayer/html/ucscSession-class.html
/usr/lib64/R/library/rtracklayer/html/ucscTrackLine-class.html
/usr/lib64/R/library/rtracklayer/html/ucscTrackModes-class.html
/usr/lib64/R/library/rtracklayer/html/ucscTrackModes-methods.html
/usr/lib64/R/library/rtracklayer/html/ucscView-class.html
/usr/lib64/R/library/rtracklayer/html/wigToBigWig.html
/usr/lib64/R/library/rtracklayer/html/wigTrackLine-class.html
/usr/lib64/R/library/rtracklayer/libs/rtracklayer.so
/usr/lib64/R/library/rtracklayer/notes/design.org
/usr/lib64/R/library/rtracklayer/notes/requirements.tex
/usr/lib64/R/library/rtracklayer/notes/use-cases.tex
/usr/lib64/R/library/rtracklayer/scripts/cpneTrack.R
/usr/lib64/R/library/rtracklayer/scripts/twobit.R
/usr/lib64/R/library/rtracklayer/tests/bed.bw
/usr/lib64/R/library/rtracklayer/tests/bed.wig
/usr/lib64/R/library/rtracklayer/tests/genes.gff3
/usr/lib64/R/library/rtracklayer/tests/gtf.gff
/usr/lib64/R/library/rtracklayer/tests/multi.wig
/usr/lib64/R/library/rtracklayer/tests/step.wig
/usr/lib64/R/library/rtracklayer/tests/test.2bit
/usr/lib64/R/library/rtracklayer/tests/test.R
/usr/lib64/R/library/rtracklayer/tests/test.bed
/usr/lib64/R/library/rtracklayer/tests/test.bed15
/usr/lib64/R/library/rtracklayer/tests/test.bedGraph
/usr/lib64/R/library/rtracklayer/tests/test.bw
/usr/lib64/R/library/rtracklayer/tests/test.gtf
/usr/lib64/R/library/rtracklayer/tests/v1.gff
/usr/lib64/R/library/rtracklayer/tests/v2.gff
/usr/lib64/R/library/rtracklayer/tests/v3.gff
/usr/lib64/R/library/rtracklayer/tests/variableStep.bw
/usr/lib64/R/library/rtracklayer/tests/variableStep.wig
/usr/lib64/R/library/rtracklayer/tests/quickload/contents.txt
/usr/lib64/R/library/rtracklayer/tests/quickload/T_species_Oct_2011/T_species_Oct_2011.2bit
/usr/lib64/R/library/rtracklayer/tests/quickload/T_species_Oct_2011/annots.xml
/usr/lib64/R/library/rtracklayer/tests/quickload/T_species_Oct_2011/bedData.bed.gz
/usr/lib64/R/library/rtracklayer/tests/quickload/T_species_Oct_2011/bedData.bed.gz.tbi
/usr/lib64/R/library/rtracklayer/tests/quickload/T_species_Oct_2011/bedGraphData.bw
/usr/lib64/R/library/rtracklayer/tests/quickload/T_species_Oct_2011/mod_chromInfo.txt
/usr/lib64/R/library/rtracklayer/unitTests/test_bed.R
/usr/lib64/R/library/rtracklayer/unitTests/test_bedGraph.R
/usr/lib64/R/library/rtracklayer/unitTests/test_bw.R
/usr/lib64/R/library/rtracklayer/unitTests/test_gff.R
/usr/lib64/R/library/rtracklayer/unitTests/test_twoBit.R
/usr/lib64/R/library/rtracklayer/unitTests/test_wig.R

Changelog

2014-07-25 - Denis Silakov <denis.silakov@rosalab.ru> 1.22.3-2
+ Revision: 5927bea
- MassBuild#464: Increase release tag

See Also

Package Description
R-sampleSelection-0.7.2-3-rosa2014.1.x86_64.rpm Sample Selection Models
R-sandwich-2.3.0-2-rosa2014.1.x86_64.rpm Robust Covariance Matrix Estimators
R-scales-0.2.3-2-rosa2014.1.noarch.rpm Scale functions for graphics
R-scatterplot3d-0.3.35-2-rosa2014.1.x86_64.rpm 3D Scatter Plot
R-sem-3.1.3-2-rosa2014.1.noarch.rpm Structural Equation Models
R-sendmailR-1.1.2-1-rosa2014.1.noarch.rpm send email using R
R-seqnames.db-1.0.1-2-rosa2014.1.noarch.rpm Chromosome Name translations
R-seriation-1.0.13-2-rosa2014.1.x86_64.rpm Infrastructure for seriation
R-setRNG-2011.11.2-2-rosa2014.1.x86_64.rpm Set (Normal) Random Number Generator and Seed
R-sets-1.0.13-3-rosa2014.1.x86_64.rpm Sets, Generalized Sets, Customizable Sets and Intervals
R-sfsmisc-1.0.26-2-rosa2014.1.noarch.rpm Utilities from Seminar fuer Statistik ETH Zurich
R-sgeostat-1.0.25-3-rosa2014.1.x86_64.rpm An Object-oriented Framework for Geostatistical Modeling in S+
R-shapefiles-0.7-3-rosa2014.1.noarch.rpm Read and Write ESRI Shapefiles
R-shapes-1.1.9-2-rosa2014.1.noarch.rpm Statistical shape analysis
R-siatclust-1.0.5-3-rosa2014.1.x86_64.rpm Shenzhen Institutes of Advanced Technology Clustering Suite
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