primer3-2.3.1-2-rosa2014.1.x86_64.rpm


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Description

primer3 - PCR reactions primers identification

Property Value
Distribution ROSA 2014.1
Repository ROSA Contrib x86_64
Package name primer3
Package version 2.3.1
Package release 2-rosa2014.1
Package architecture x86_64
Package type rpm
Installed size 650.62 KB
Download size 166.54 KB
Official Mirror mirror.rosalab.ru
Primer3 is a complete rewrite of the original PRIMER program
(Primer 0.5), written by Steve Lincoln, Mark Daly, and Eric
Lander.
Primer3 picks primers for PCR reactions, considering as criteria:
- oligonucleotide melting temperature, size, GC content,
and primer-dimer possibilities
- PCR product size
- positional constraints within the source sequence
- miscellaneous other constraints
All of these criteria are user-specifiable as constraints, and
some are specifiable as terms in an objective function that
characterizes an optimal primer pair.

Alternatives

Package Version Architecture Repository
primer3-2.3.6-1-rosa2014.1.i586.rpm 2.3.6 i586 ROSA Contrib Updates
primer3-2.3.6-1-rosa2014.1.x86_64.rpm 2.3.6 x86_64 ROSA Contrib Updates
primer3-2.3.1-2-rosa2014.1.i586.rpm 2.3.1 i586 ROSA Contrib
primer3 - - -

Requires

Name Value
libc.so.6()(64bit) -
libc.so.6(GLIBC_2.11)(64bit) -
libc.so.6(GLIBC_2.14)(64bit) -
libc.so.6(GLIBC_2.2.5)(64bit) -
libc.so.6(GLIBC_2.3)(64bit) -
libc.so.6(GLIBC_2.3.4)(64bit) -
libc.so.6(GLIBC_2.4)(64bit) -
libgcc_s.so.1()(64bit) -
libgcc_s.so.1(GCC_3.0)(64bit) -
libm.so.6()(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -
libstdc++.so.6()(64bit) -
libstdc++.so.6(CXXABI_1.3)(64bit) -
libstdc++.so.6(GLIBCXX_3.4)(64bit) -

Provides

Name Value
primer3 == 2.3.1-2:2014.1

Download

Type URL
Binary Package primer3-2.3.1-2-rosa2014.1.x86_64.rpm
Source Package primer3-2.3.1-2.src.rpm

Install Howto

  1. Enable ROSA Contrib repository on Install and Remove Software"
  2. Update packages list:
    # urpmi.update -a
  3. Install primer3 rpm package:
    # urpmi primer3

Files

Path
/usr/bin/long_seq_tm_test
/usr/bin/ntdpal
/usr/bin/ntthal
/usr/bin/oligotm
/usr/bin/primer3_core
/usr/share/doc/primer3/COPYING.txt
/usr/share/doc/primer3/example
/usr/share/doc/primer3/p3_th_settings.txt
/usr/share/doc/primer3/primer3_manual.htm
/usr/share/doc/primer3/primer3_v1_1_4_default_settings.txt
/usr/share/doc/primer3/primer3web_v0_4_0_default_settings.txt
/usr/share/doc/primer3/primer3web_v3_0_0_default_settings.txt
/usr/share/doc/primer3/release_notes.txt

Changelog

2014-07-25 - Denis Silakov <denis.silakov@rosalab.ru> 2.3.1-2
+ Revision: 7b94454
- MassBuild#464: Increase release tag

See Also

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proxy-connect-1.95-6-rosa2014.1.x86_64.rpm Establish TCP connection using SOCKS4/5 and HTTP tunnel
proxychains-3.1-7-rosa2014.1.x86_64.rpm This program forces any tcp connection to follow through proxy
proxycheck-0.49a-9-rosa2014.1.x86_64.rpm A quick open proxy scanner
proxycheck-proxylogger-0.49a-9-rosa2014.1.x86_64.rpm Receiving part of proxycheck
proxytunnel-1.9.0-8-rosa2014.1.x86_64.rpm Proxytunnel SSH to connect through HTTPS proxies
prozilla-2.0.4-9-rosa2014.1.x86_64.rpm A multithreaded download accelerator
prozilla-devel-2.0.4-9-rosa2014.1.x86_64.rpm Header files and development files for prozilla
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