python-biopython-tools-1.64-2-rosa2014.1.x86_64.rpm


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Description

python-biopython-tools - Regression testing code and miscellaneous standalone scripts

Property Value
Distribution ROSA 2014.1
Repository ROSA Contrib x86_64
Package name python-biopython-tools
Package version 1.64
Package release 2-rosa2014.1
Package architecture x86_64
Package type rpm
Installed size 24.35 MB
Download size 3.31 MB
Official Mirror mirror.rosalab.ru
This package provides various scripts and tests that are comprised by the
Biopython Project.

Alternatives

Package Version Architecture Repository
python-biopython-tools-1.66-1-rosa2014.1.i586.rpm 1.66 i586 ROSA Contrib Updates
python-biopython-tools-1.66-1-rosa2014.1.x86_64.rpm 1.66 x86_64 ROSA Contrib Updates
python-biopython-tools-1.64-2-rosa2014.1.i586.rpm 1.64 i586 ROSA Contrib
python-biopython-tools - - -

Requires

Name Value
python(abi) -
python-biopython == 1:1.64-2:2014.1

Provides

Name Value
biopython-tools == 1:1.64-2:2014.1
python-biopython-tools == 1:1.64-2:2014.1

Obsoletes

Name Value
biopython-tools < 1:1.64-2:2014.1

Download

Type URL
Binary Package python-biopython-tools-1.64-2-rosa2014.1.x86_64.rpm
Source Package python-biopython-1.64-2.src.rpm

Install Howto

  1. Enable ROSA Contrib repository on Install and Remove Software"
  2. Update packages list:
    # urpmi.update -a
  3. Install python-biopython-tools rpm package:
    # urpmi python-biopython-tools

Files

Path
/usr/share/python-biopython-1.64/Scripts/query_pubmed.py
/usr/share/python-biopython-1.64/Scripts/scop_pdb.py
/usr/share/python-biopython-1.64/Scripts/GenBank/check_output.py
/usr/share/python-biopython-1.64/Scripts/GenBank/check_output_simple.py
/usr/share/python-biopython-1.64/Scripts/GenBank/find_parser_problems.py
/usr/share/python-biopython-1.64/Scripts/PDB/generate_three_to_one_dict.py
/usr/share/python-biopython-1.64/Scripts/Performance/biosql_performance_load.py
/usr/share/python-biopython-1.64/Scripts/Performance/biosql_performance_read.py
/usr/share/python-biopython-1.64/Scripts/Restriction/ranacompiler.py
/usr/share/python-biopython-1.64/Scripts/Restriction/rebase_update.py
/usr/share/python-biopython-1.64/Scripts/SeqGui/SeqGui.py
/usr/share/python-biopython-1.64/Scripts/Structure/hsexpo
/usr/share/python-biopython-1.64/Scripts/debug/debug_blast_parser.py
/usr/share/python-biopython-1.64/Scripts/xbbtools/README
/usr/share/python-biopython-1.64/Scripts/xbbtools/nextorf.py
/usr/share/python-biopython-1.64/Scripts/xbbtools/test.fas
/usr/share/python-biopython-1.64/Scripts/xbbtools/testrp.fas
/usr/share/python-biopython-1.64/Scripts/xbbtools/xbb_blast.py
/usr/share/python-biopython-1.64/Scripts/xbbtools/xbb_blastbg.py
/usr/share/python-biopython-1.64/Scripts/xbbtools/xbb_help.py
/usr/share/python-biopython-1.64/Scripts/xbbtools/xbb_search.py
/usr/share/python-biopython-1.64/Scripts/xbbtools/xbb_translations.py
/usr/share/python-biopython-1.64/Scripts/xbbtools/xbb_utils.py
/usr/share/python-biopython-1.64/Scripts/xbbtools/xbb_widget.py
/usr/share/python-biopython-1.64/Scripts/xbbtools/xbbtools.py
/usr/share/python-biopython-1.64/Tests/common_BioSQL.py
/usr/share/python-biopython-1.64/Tests/requires_internet.py
/usr/share/python-biopython-1.64/Tests/requires_wise.py
/usr/share/python-biopython-1.64/Tests/run_tests.py
/usr/share/python-biopython-1.64/Tests/search_tests_common.py
/usr/share/python-biopython-1.64/Tests/seq_tests_common.py
/usr/share/python-biopython-1.64/Tests/test_Ace.py
/usr/share/python-biopython-1.64/Tests/test_AlignIO.py
/usr/share/python-biopython-1.64/Tests/test_AlignIO_FastaIO.py
/usr/share/python-biopython-1.64/Tests/test_AlignIO_convert.py
/usr/share/python-biopython-1.64/Tests/test_Application.py
/usr/share/python-biopython-1.64/Tests/test_BWA_tool.py
/usr/share/python-biopython-1.64/Tests/test_BioSQL_MySQLdb.py
/usr/share/python-biopython-1.64/Tests/test_BioSQL_mysql_connector.py
/usr/share/python-biopython-1.64/Tests/test_BioSQL_psycopg2.py
/usr/share/python-biopython-1.64/Tests/test_BioSQL_sqlite3.py
/usr/share/python-biopython-1.64/Tests/test_CAPS.py
/usr/share/python-biopython-1.64/Tests/test_CelFile.py
/usr/share/python-biopython-1.64/Tests/test_Chi2.py
/usr/share/python-biopython-1.64/Tests/test_ClustalOmega_tool.py
/usr/share/python-biopython-1.64/Tests/test_Clustalw_tool.py
/usr/share/python-biopython-1.64/Tests/test_Cluster.py
/usr/share/python-biopython-1.64/Tests/test_CodonAlign.py
/usr/share/python-biopython-1.64/Tests/test_CodonTable.py
/usr/share/python-biopython-1.64/Tests/test_CodonUsage.py
/usr/share/python-biopython-1.64/Tests/test_ColorSpiral.py
/usr/share/python-biopython-1.64/Tests/test_Compass.py
/usr/share/python-biopython-1.64/Tests/test_Consensus.py
/usr/share/python-biopython-1.64/Tests/test_Crystal.py
/usr/share/python-biopython-1.64/Tests/test_DSSP_tool.py
/usr/share/python-biopython-1.64/Tests/test_Dialign_tool.py
/usr/share/python-biopython-1.64/Tests/test_DocSQL.py
/usr/share/python-biopython-1.64/Tests/test_Emboss.py
/usr/share/python-biopython-1.64/Tests/test_EmbossPhylipNew.py
/usr/share/python-biopython-1.64/Tests/test_EmbossPrimer.py
/usr/share/python-biopython-1.64/Tests/test_Entrez.py
/usr/share/python-biopython-1.64/Tests/test_Entrez_online.py
/usr/share/python-biopython-1.64/Tests/test_Enzyme.py
/usr/share/python-biopython-1.64/Tests/test_FSSP.py
/usr/share/python-biopython-1.64/Tests/test_Fasttree_tool.py
/usr/share/python-biopython-1.64/Tests/test_File.py
/usr/share/python-biopython-1.64/Tests/test_GACrossover.py
/usr/share/python-biopython-1.64/Tests/test_GAMutation.py
/usr/share/python-biopython-1.64/Tests/test_GAOrganism.py
/usr/share/python-biopython-1.64/Tests/test_GAQueens.py
/usr/share/python-biopython-1.64/Tests/test_GARepair.py
/usr/share/python-biopython-1.64/Tests/test_GASelection.py
/usr/share/python-biopython-1.64/Tests/test_GenBank.py
/usr/share/python-biopython-1.64/Tests/test_GenBank_unittest.py
/usr/share/python-biopython-1.64/Tests/test_GenomeDiagram.py
/usr/share/python-biopython-1.64/Tests/test_GraphicsBitmaps.py
/usr/share/python-biopython-1.64/Tests/test_GraphicsChromosome.py
/usr/share/python-biopython-1.64/Tests/test_GraphicsDistribution.py
/usr/share/python-biopython-1.64/Tests/test_GraphicsGeneral.py
/usr/share/python-biopython-1.64/Tests/test_HMMCasino.py
/usr/share/python-biopython-1.64/Tests/test_HMMGeneral.py
/usr/share/python-biopython-1.64/Tests/test_KDTree.py
/usr/share/python-biopython-1.64/Tests/test_KEGG.py
/usr/share/python-biopython-1.64/Tests/test_KeyWList.py
/usr/share/python-biopython-1.64/Tests/test_Location.py
/usr/share/python-biopython-1.64/Tests/test_LogisticRegression.py
/usr/share/python-biopython-1.64/Tests/test_MMCIF.py
/usr/share/python-biopython-1.64/Tests/test_MSAProbs_tool.py
/usr/share/python-biopython-1.64/Tests/test_Mafft_tool.py
/usr/share/python-biopython-1.64/Tests/test_MarkovModel.py
/usr/share/python-biopython-1.64/Tests/test_Medline.py
/usr/share/python-biopython-1.64/Tests/test_Motif.py
/usr/share/python-biopython-1.64/Tests/test_Muscle_tool.py
/usr/share/python-biopython-1.64/Tests/test_NACCESS_tool.py
/usr/share/python-biopython-1.64/Tests/test_NCBITextParser.py
/usr/share/python-biopython-1.64/Tests/test_NCBIXML.py
/usr/share/python-biopython-1.64/Tests/test_NCBI_BLAST_tools.py
/usr/share/python-biopython-1.64/Tests/test_NCBI_qblast.py
/usr/share/python-biopython-1.64/Tests/test_NNExclusiveOr.py
/usr/share/python-biopython-1.64/Tests/test_NNGene.py
/usr/share/python-biopython-1.64/Tests/test_NNGeneral.py
/usr/share/python-biopython-1.64/Tests/test_Nexus.py
/usr/share/python-biopython-1.64/Tests/test_PAML_baseml.py
/usr/share/python-biopython-1.64/Tests/test_PAML_codeml.py
/usr/share/python-biopython-1.64/Tests/test_PAML_tools.py
/usr/share/python-biopython-1.64/Tests/test_PAML_yn00.py
/usr/share/python-biopython-1.64/Tests/test_PDB.py
/usr/share/python-biopython-1.64/Tests/test_PDB_KDTree.py
/usr/share/python-biopython-1.64/Tests/test_ParserSupport.py
/usr/share/python-biopython-1.64/Tests/test_Pathway.py
/usr/share/python-biopython-1.64/Tests/test_Phd.py
/usr/share/python-biopython-1.64/Tests/test_Phylo.py
/usr/share/python-biopython-1.64/Tests/test_PhyloXML.py
/usr/share/python-biopython-1.64/Tests/test_Phylo_CDAO.py
/usr/share/python-biopython-1.64/Tests/test_Phylo_NeXML.py
/usr/share/python-biopython-1.64/Tests/test_Phylo_depend.py
/usr/share/python-biopython-1.64/Tests/test_PopGen_DFDist.py
/usr/share/python-biopython-1.64/Tests/test_PopGen_FDist.py
/usr/share/python-biopython-1.64/Tests/test_PopGen_FDist_nodepend.py
/usr/share/python-biopython-1.64/Tests/test_PopGen_FastSimCoal.py
/usr/share/python-biopython-1.64/Tests/test_PopGen_GenePop.py
/usr/share/python-biopython-1.64/Tests/test_PopGen_GenePop_EasyController.py
/usr/share/python-biopython-1.64/Tests/test_PopGen_GenePop_nodepend.py
/usr/share/python-biopython-1.64/Tests/test_PopGen_SimCoal.py
/usr/share/python-biopython-1.64/Tests/test_PopGen_SimCoal_nodepend.py
/usr/share/python-biopython-1.64/Tests/test_Prank_tool.py
/usr/share/python-biopython-1.64/Tests/test_Probcons_tool.py
/usr/share/python-biopython-1.64/Tests/test_ProtParam.py
/usr/share/python-biopython-1.64/Tests/test_Restriction.py
/usr/share/python-biopython-1.64/Tests/test_SCOP_Astral.py
/usr/share/python-biopython-1.64/Tests/test_SCOP_Cla.py
/usr/share/python-biopython-1.64/Tests/test_SCOP_Des.py
/usr/share/python-biopython-1.64/Tests/test_SCOP_Dom.py
/usr/share/python-biopython-1.64/Tests/test_SCOP_Hie.py
/usr/share/python-biopython-1.64/Tests/test_SCOP_Raf.py
/usr/share/python-biopython-1.64/Tests/test_SCOP_Residues.py
/usr/share/python-biopython-1.64/Tests/test_SCOP_Scop.py
/usr/share/python-biopython-1.64/Tests/test_SCOP_online.py
/usr/share/python-biopython-1.64/Tests/test_SVDSuperimposer.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_blast_tab.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_blast_tab_index.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_blast_text.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_blast_xml.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_blast_xml_index.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_blat_psl.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_blat_psl_index.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_exonerate.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_exonerate_text_index.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_exonerate_vulgar_index.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_fasta_m10.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_fasta_m10_index.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_hmmer2_text.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_hmmer2_text_index.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_hmmer3_domtab.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_hmmer3_domtab_index.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_hmmer3_tab.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_hmmer3_tab_index.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_hmmer3_text.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_hmmer3_text_index.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_model.py
/usr/share/python-biopython-1.64/Tests/test_SearchIO_write.py
/usr/share/python-biopython-1.64/Tests/test_SeqIO.py
/usr/share/python-biopython-1.64/Tests/test_SeqIO_AbiIO.py
/usr/share/python-biopython-1.64/Tests/test_SeqIO_FastaIO.py
/usr/share/python-biopython-1.64/Tests/test_SeqIO_Insdc.py
/usr/share/python-biopython-1.64/Tests/test_SeqIO_PdbIO.py
/usr/share/python-biopython-1.64/Tests/test_SeqIO_QualityIO.py
/usr/share/python-biopython-1.64/Tests/test_SeqIO_SeqXML.py
/usr/share/python-biopython-1.64/Tests/test_SeqIO_convert.py
/usr/share/python-biopython-1.64/Tests/test_SeqIO_features.py
/usr/share/python-biopython-1.64/Tests/test_SeqIO_index.py
/usr/share/python-biopython-1.64/Tests/test_SeqIO_online.py
/usr/share/python-biopython-1.64/Tests/test_SeqIO_write.py
/usr/share/python-biopython-1.64/Tests/test_SeqRecord.py
/usr/share/python-biopython-1.64/Tests/test_SeqUtils.py
/usr/share/python-biopython-1.64/Tests/test_Seq_objs.py
/usr/share/python-biopython-1.64/Tests/test_SffIO.py
/usr/share/python-biopython-1.64/Tests/test_SubsMat.py
/usr/share/python-biopython-1.64/Tests/test_SwissProt.py
/usr/share/python-biopython-1.64/Tests/test_TCoffee_tool.py
/usr/share/python-biopython-1.64/Tests/test_TogoWS.py
/usr/share/python-biopython-1.64/Tests/test_TreeConstruction.py
/usr/share/python-biopython-1.64/Tests/test_Tutorial.py
/usr/share/python-biopython-1.64/Tests/test_UniGene.py
/usr/share/python-biopython-1.64/Tests/test_Uniprot.py
/usr/share/python-biopython-1.64/Tests/test_Wise.py
/usr/share/python-biopython-1.64/Tests/test_XXmotif_tool.py
/usr/share/python-biopython-1.64/Tests/test_align.py
/usr/share/python-biopython-1.64/Tests/test_bgzf.py
/usr/share/python-biopython-1.64/Tests/test_geo.py
/usr/share/python-biopython-1.64/Tests/test_kNN.py
/usr/share/python-biopython-1.64/Tests/test_lowess.py
/usr/share/python-biopython-1.64/Tests/test_motifs.py
/usr/share/python-biopython-1.64/Tests/test_pairwise2.py
/usr/share/python-biopython-1.64/Tests/test_phyml_tool.py
/usr/share/python-biopython-1.64/Tests/test_prodoc.py
/usr/share/python-biopython-1.64/Tests/test_prosite1.py
/usr/share/python-biopython-1.64/Tests/test_prosite2.py
/usr/share/python-biopython-1.64/Tests/test_psw.py
/usr/share/python-biopython-1.64/Tests/test_py3k.py
/usr/share/python-biopython-1.64/Tests/test_raxml_tool.py
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/usr/share/python-biopython-1.64/Tests/Abi/empty.ab1
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/usr/share/python-biopython-1.64/Tests/Ace/consed_sample.ace
/usr/share/python-biopython-1.64/Tests/Ace/contig1.ace
/usr/share/python-biopython-1.64/Tests/Ace/seq.cap.ace
/usr/share/python-biopython-1.64/Tests/Affy/affy_v3_example.CEL
/usr/share/python-biopython-1.64/Tests/BWA/HNSCC1_1_truncated.fastq
/usr/share/python-biopython-1.64/Tests/BWA/HNSCC1_2_truncated.fastq
/usr/share/python-biopython-1.64/Tests/BWA/human_g1k_v37_truncated.fasta
/usr/share/python-biopython-1.64/Tests/BioSQL/biosqldb-mysql.sql
/usr/share/python-biopython-1.64/Tests/BioSQL/biosqldb-pg.sql
/usr/share/python-biopython-1.64/Tests/BioSQL/biosqldb-sqlite.sql
/usr/share/python-biopython-1.64/Tests/BioSQL/cor6_6.db
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/usr/share/python-biopython-1.64/Tests/Blast/mirna.tab
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/usr/share/python-biopython-1.64/Tests/Blast/tab_2226_tblastn_001.txt
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/usr/share/python-biopython-1.64/Tests/Blast/text_2010L_blastn_001.txt
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/usr/share/python-biopython-1.64/Tests/Blast/text_2010L_phiblast_001.txt
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/usr/share/python-biopython-1.64/Tests/Blast/text_2010L_tblastn_001.txt
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/usr/share/python-biopython-1.64/Tests/Blast/text_2010L_tblastx_001.txt
/usr/share/python-biopython-1.64/Tests/Blast/text_2011L_blastn_001.txt
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/usr/share/python-biopython-1.64/Tests/Blast/text_2011L_blastn_004.txt
/usr/share/python-biopython-1.64/Tests/Blast/text_2011L_blastp_001.txt
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Changelog

2014-07-25 - Denis Silakov <denis.silakov@rosalab.ru> 1:1.64-2
+ Revision: 3851192
- MassBuild#464: Increase release tag

See Also

Package Description
python-bitarray-0.8.1-2-rosa2014.1.x86_64.rpm Efficient arrays of booleans -- C extension
python-blockcanvas-4.0.3-2-rosa2014.1.x86_64.rpm Enthought Tool Suite - blockcanvas project
python-blockcanvas-devel-4.0.3-2-rosa2014.1.x86_64.rpm Enthought Tool Suite - blockcanvas project
python-blosc-1.2.3-2-rosa2014.1.x86_64.rpm Blosc data compressor
python-boto-2.32.1-1-rosa2014.1.x86_64.rpm Python interface to Amazon Web Services
python-bottle-0.12.7-3-rosa2014.1.noarch.rpm Fast and simple WSGI-framework for small web-applications
python-bottleneck-0.8.0-2-rosa2014.1.x86_64.rpm Fast NumPy array functions written in Cython
python-bugz-0.8.0-5-rosa2014.1.noarch.rpm A python and command line interface to Bugzilla
python-caja-1.8.0-3-rosa2014.1.x86_64.rpm Python bindings for MATE's caja
python-caja-devel-1.8.0-3-rosa2014.1.x86_64.rpm Pkgconfig file and examples for python-caja
python-card-0.8.2-2-rosa2014.1.noarch.rpm PythonCard GUI construction toolkit
python-carrot-0.10.7-2-rosa2014.1.noarch.rpm AMQP Messaging Framework for Python
python-casuarius-1.1-2-rosa2014.1.x86_64.rpm Cython bindings for the Cassowary constraint solver
python-cdb-0.34-14-rosa2014.1.x86_64.rpm A python interface to constant database files (cdb)
python-celery-3.1.12-2-rosa2014.1.noarch.rpm Distributed Task Queue
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