sim4-20030921-9-rosa2014.1.x86_64.rpm


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Description

sim4 - Program to align cDNA and genomic DNA

Property Value
Distribution ROSA 2014.1
Repository ROSA Contrib x86_64
Package name sim4
Package version 20030921
Package release 9-rosa2014.1
Package architecture x86_64
Package type rpm
Installed size 99.78 KB
Download size 49.11 KB
Official Mirror mirror.rosalab.ru
sim4 is a similarity-based tool for aligning an expressed DNA sequence
(EST, cDNA, mRNA) with a genomic sequence for the gene.
It also detects end matches when the two input sequences overlap at one end
(i.e., the start of one sequence overlaps the end of the other)
Reference for Sim4:
L. Florea, G. Hartzell, Z. Zhang, G. Rubin, and W. Miller (1998)
"A computer program for aligning a cDNA sequence with a genomic DNA sequence."
Genome Research 8, 967-974.

Alternatives

Package Version Architecture Repository
sim4-20030921-10-rosa2014.1.i586.rpm 20030921 i586 ROSA Contrib Updates
sim4-20030921-10-rosa2014.1.x86_64.rpm 20030921 x86_64 ROSA Contrib Updates
sim4-20030921-9-rosa2014.1.i586.rpm 20030921 i586 ROSA Contrib
sim4 - - -

Requires

Name Value
libc.so.6()(64bit) -
libc.so.6(GLIBC_2.14)(64bit) -
libc.so.6(GLIBC_2.2.5)(64bit) -
libc.so.6(GLIBC_2.3)(64bit) -
libc.so.6(GLIBC_2.3.4)(64bit) -
libc.so.6(GLIBC_2.4)(64bit) -
libc.so.6(GLIBC_2.7)(64bit) -
libm.so.6()(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -

Provides

Name Value
sim4 == 20030921-9:2014.1

Download

Type URL
Binary Package sim4-20030921-9-rosa2014.1.x86_64.rpm
Source Package sim4-20030921-9.src.rpm

Install Howto

  1. Enable ROSA Contrib repository on Install and Remove Software"
  2. Update packages list:
    # urpmi.update -a
  3. Install sim4 rpm package:
    # urpmi sim4

Files

Path
/usr/bin/sim4
/usr/share/doc/sim4/COPYRIGHT
/usr/share/doc/sim4/README.sim4
/usr/share/doc/sim4/VERSION

Changelog

2014-07-25 - Denis Silakov <denis.silakov@rosalab.ru> 20030921-9
+ Revision: e9962dc
- MassBuild#464: Increase release tag

See Also

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simpleburn-1.6.4-2-rosa2014.1.x86_64.rpm SimpleBurn is a basic burning tool for CDs and DVDs
simplescreenrecorder-0.1.2-3-rosa2014.1.x86_64.rpm A feature-rich screen recorder that supports X11 and OpenGL
simplyhtml-0.12.3-0.0.3-rosa2014.1.x86_64.rpm Application and a java component for rich text processing
simplyhtml-javadoc-0.12.3-0.0.3-rosa2014.1.x86_64.rpm Javadoc documentation for simplyhtml
simplyhtml0.11-0.11-5-rosa2014.1.x86_64.rpm Application and a java component for rich text processing
simplyhtml0.11-javadoc-0.11-5-rosa2014.1.x86_64.rpm Javadoc documentation for simplyhtml0.11
simutrans-0.111.3.1-2-rosa2014.1.x86_64.rpm Transport and Economic Simulation Game
simutrans-pak128-0.111.2-3-rosa2014.1.noarch.rpm A complete Simutrans game data package with 128x128 tiles
sinthgunt-2.0.3-2-rosa2014.1.noarch.rpm Easy to use gui for ffmpeg
sion-0.1.0-3-rosa2014.1.x86_64.rpm Frontend for GIO/GVFS
sipfwd-0.7-4-rosa2014.1.x86_64.rpm Stateless SIP Proxy
sipp-1.0-9-rosa2014.1.x86_64.rpm Performance testing tool for the SIP protocol
sipsak-0.9.6-8-rosa2014.1.x86_64.rpm SIP swiss army knife
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