R-chipseq-1.18.0-1-rosa2014.1.i586.rpm


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Description

R-chipseq - chipseq: A package for analyzing chipseq data

Property Value
Distribution ROSA 2014.1
Repository ROSA Contrib Updates i586
Package name R-chipseq
Package version 1.18.0
Package release 1-rosa2014.1
Package architecture i586
Package type rpm
Installed size 2.48 MB
Download size 2.16 MB
Official Mirror mirror.rosalab.ru
Tools for helping process short read data for chipseq experiments

Alternatives

Package Version Architecture Repository
R-chipseq-1.18.0-1-rosa2014.1.x86_64.rpm 1.18.0 x86_64 ROSA Contrib Updates
R-chipseq - - -

Requires

Name Value
R-BSgenome -
R-BiocGenerics -
R-GenomicFeatures -
R-GenomicRanges -
R-IRanges -
R-S4Vectors -
R-ShortRead -
R-TxDb.Mmusculus.UCSC.mm9.knownGene -
R-lattice -
R-methods -
R-stats -
libR.so -
libc.so.6 -
libc.so.6(GLIBC_2.1.3) -

Provides

Name Value
R-chipseq == 1.18.0-1:2014.1
chipseq.so -

Download

Type URL
Binary Package R-chipseq-1.18.0-1-rosa2014.1.i586.rpm
Source Package R-chipseq-1.18.0-1.src.rpm

Install Howto

  1. Enable ROSA Contrib Updates repository on Install and Remove Software
  2. Update packages list:
    # urpmi.update -a
  3. Install R-chipseq rpm package:
    # urpmi R-chipseq

Files

Path
/usr/lib/R/library/chipseq/DESCRIPTION
/usr/lib/R/library/chipseq/INDEX
/usr/lib/R/library/chipseq/NAMESPACE
/usr/lib/R/library/chipseq/Meta/Rd.rds
/usr/lib/R/library/chipseq/Meta/data.rds
/usr/lib/R/library/chipseq/Meta/hsearch.rds
/usr/lib/R/library/chipseq/Meta/links.rds
/usr/lib/R/library/chipseq/Meta/nsInfo.rds
/usr/lib/R/library/chipseq/Meta/package.rds
/usr/lib/R/library/chipseq/Meta/vignette.rds
/usr/lib/R/library/chipseq/R/chipseq
/usr/lib/R/library/chipseq/R/chipseq.rdb
/usr/lib/R/library/chipseq/R/chipseq.rdx
/usr/lib/R/library/chipseq/Scripts/AntibodyComparison.Rnw
/usr/lib/R/library/chipseq/Scripts/CTCFBindingSites.R
/usr/lib/R/library/chipseq/Scripts/CTCF_ERV.R
/usr/lib/R/library/chipseq/Scripts/CopyNumber.Rnw
/usr/lib/R/library/chipseq/Scripts/Islands.Rnw
/usr/lib/R/library/chipseq/Scripts/MyoD.R
/usr/lib/R/library/chipseq/Scripts/PairedEndComparison.Rnw
/usr/lib/R/library/chipseq/Scripts/PeakContextHuman.Rnw
/usr/lib/R/library/chipseq/Scripts/PeakContextMouse.Rnw
/usr/lib/R/library/chipseq/Scripts/PeakCutoff.Rnw
/usr/lib/R/library/chipseq/Scripts/PeakModel.Rnw
/usr/lib/R/library/chipseq/Scripts/PeakReproducibility.Rnw
/usr/lib/R/library/chipseq/Scripts/PeaksByCopyNumber.Rnw
/usr/lib/R/library/chipseq/Scripts/RateComparison.Rnw
/usr/lib/R/library/chipseq/Scripts/ReadAndSave54.R
/usr/lib/R/library/chipseq/Scripts/ReadAndSaveCTCF.R
/usr/lib/R/library/chipseq/Scripts/ReadAndSaveData.R
/usr/lib/R/library/chipseq/Scripts/ReadAndSaveSimulation.R
/usr/lib/R/library/chipseq/Scripts/SolexaSim.R
/usr/lib/R/library/chipseq/Scripts/abc.rda
/usr/lib/R/library/chipseq/Scripts/antibody_comparison.R
/usr/lib/R/library/chipseq/Scripts/dePeaks.R
/usr/lib/R/library/chipseq/Scripts/diffpeak.R
/usr/lib/R/library/chipseq/Scripts/diffpeaks.R
/usr/lib/R/library/chipseq/Scripts/estimate_fragment_size.R
/usr/lib/R/library/chipseq/Scripts/fibroblasts.R
/usr/lib/R/library/chipseq/Scripts/figs
/usr/lib/R/library/chipseq/Scripts/getIsochores.R
/usr/lib/R/library/chipseq/Scripts/hmm.R
/usr/lib/R/library/chipseq/Scripts/human-islands.R
/usr/lib/R/library/chipseq/Scripts/isochore_comparison.R
/usr/lib/R/library/chipseq/Scripts/isochores.mm9.rda
/usr/lib/R/library/chipseq/Scripts/negbinomial.R
/usr/lib/R/library/chipseq/Scripts/peakContext.R
/usr/lib/R/library/chipseq/Scripts/peak_mle.R
/usr/lib/R/library/chipseq/Scripts/poisson.R
/usr/lib/R/library/chipseq/Scripts/simulate.R
/usr/lib/R/library/chipseq/Scripts/singletons.Rnw
/usr/lib/R/library/chipseq/Scripts/solexa54.R
/usr/lib/R/library/chipseq/data/cstest.rda
/usr/lib/R/library/chipseq/data/datalist
/usr/lib/R/library/chipseq/doc/Workflow.R
/usr/lib/R/library/chipseq/doc/Workflow.Rnw
/usr/lib/R/library/chipseq/doc/Workflow.pdf
/usr/lib/R/library/chipseq/doc/index.html
/usr/lib/R/library/chipseq/help/AnIndex
/usr/lib/R/library/chipseq/help/aliases.rds
/usr/lib/R/library/chipseq/help/chipseq.rdb
/usr/lib/R/library/chipseq/help/chipseq.rdx
/usr/lib/R/library/chipseq/help/paths.rds
/usr/lib/R/library/chipseq/html/00Index.html
/usr/lib/R/library/chipseq/html/R.css
/usr/lib/R/library/chipseq/html/chipseqFilter.html
/usr/lib/R/library/chipseq/html/coverageplot.html
/usr/lib/R/library/chipseq/html/cstest.html
/usr/lib/R/library/chipseq/html/diffPeakSummary.html
/usr/lib/R/library/chipseq/html/estimate.mean.fraglen.html
/usr/lib/R/library/chipseq/html/islandDepthPlot.html
/usr/lib/R/library/chipseq/html/laneSubsample.html
/usr/lib/R/library/chipseq/html/peakCutoff.html
/usr/lib/R/library/chipseq/html/peakSummary-methods.html
/usr/lib/R/library/chipseq/html/subsetSummary.html
/usr/lib/R/library/chipseq/libs/chipseq.so

Changelog

2015-07-13 - Denis Silakov <denis.silakov@rosalab.ru> 1.18.0-1
- (4c433b2) Upload tarball

See Also

Package Description
R-chron-2.3.47-1-rosa2014.1.i586.rpm Chronological objects which can handle dates and times
R-circular-0.4.7-1-rosa2014.1.i586.rpm Circular Statistics
R-coin-1.0.24-2-rosa2014.1.i586.rpm Conditional Inference Procedures in a Permutation Test Framework
R-corpcor-1.6.7-2-rosa2014.1.noarch.rpm Efficient Estimation of Covariance and (Partial) Correlation
R-corrgram-1.7-2-rosa2014.1.noarch.rpm Plot a correlogram
R-deldir-0.1.9-1-rosa2014.1.i586.rpm Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
R-denstrip-1.5.3-1-rosa2014.1.noarch.rpm Density strips and other methods for compactly illustrating distributions
R-descr-1.1.1-2-rosa2014.1.i586.rpm Descriptive statistics
R-digest-0.6.8-2-rosa2014.1.i586.rpm Create cryptographic hash digests of R objects
R-diptest-0.75.7-2-rosa2014.1.i586.rpm Hartigan's dip test statistic for unimodality - corrected code
R-doBy-4.5.13-1-rosa2014.1.i586.rpm Groupwise summary statistics, general linear contrasts, population means, etc
R-doMC-1.3.3-2-rosa2014.1.noarch.rpm Foreach parallel adaptor for the multicore package
R-doParallel-1.0.8-1-rosa2014.1.i586.rpm Foreach parallel adaptor for the parallel package
R-doSNOW-1.0.12-2-rosa2014.1.noarch.rpm Foreach parallel adaptor for the snow package
R-e1071-1.6.4-2-rosa2014.1.i586.rpm Misc Functions of the Department of Statistics (e1071), TU Wien
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