R-chipseq-1.18.0-1-rosa2014.1.x86_64.rpm


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Description

R-chipseq - chipseq: A package for analyzing chipseq data

Property Value
Distribution ROSA 2014.1
Repository ROSA Contrib Updates x86_64
Package name R-chipseq
Package version 1.18.0
Package release 1-rosa2014.1
Package architecture x86_64
Package type rpm
Installed size 2.48 MB
Download size 2.16 MB
Official Mirror mirror.rosalab.ru
Tools for helping process short read data for chipseq experiments

Alternatives

Package Version Architecture Repository
R-chipseq-1.18.0-1-rosa2014.1.i586.rpm 1.18.0 i586 ROSA Contrib Updates
R-chipseq - - -

Requires

Name Value
R-BSgenome -
R-BiocGenerics -
R-GenomicFeatures -
R-GenomicRanges -
R-IRanges -
R-S4Vectors -
R-ShortRead -
R-TxDb.Mmusculus.UCSC.mm9.knownGene -
R-lattice -
R-methods -
R-stats -
libR.so()(64bit) -
libc.so.6()(64bit) -
libc.so.6(GLIBC_2.2.5)(64bit) -

Provides

Name Value
R-chipseq == 1.18.0-1:2014.1
chipseq.so()(64bit) -

Download

Type URL
Binary Package R-chipseq-1.18.0-1-rosa2014.1.x86_64.rpm
Source Package R-chipseq-1.18.0-1.src.rpm

Install Howto

  1. Enable ROSA Contrib Updates repository on Install and Remove Software"
  2. Update packages list:
    # urpmi.update -a
  3. Install R-chipseq rpm package:
    # urpmi R-chipseq

Files

Path
/usr/lib64/R/library/chipseq/DESCRIPTION
/usr/lib64/R/library/chipseq/INDEX
/usr/lib64/R/library/chipseq/NAMESPACE
/usr/lib64/R/library/chipseq/Meta/Rd.rds
/usr/lib64/R/library/chipseq/Meta/data.rds
/usr/lib64/R/library/chipseq/Meta/hsearch.rds
/usr/lib64/R/library/chipseq/Meta/links.rds
/usr/lib64/R/library/chipseq/Meta/nsInfo.rds
/usr/lib64/R/library/chipseq/Meta/package.rds
/usr/lib64/R/library/chipseq/Meta/vignette.rds
/usr/lib64/R/library/chipseq/R/chipseq
/usr/lib64/R/library/chipseq/R/chipseq.rdb
/usr/lib64/R/library/chipseq/R/chipseq.rdx
/usr/lib64/R/library/chipseq/Scripts/AntibodyComparison.Rnw
/usr/lib64/R/library/chipseq/Scripts/CTCFBindingSites.R
/usr/lib64/R/library/chipseq/Scripts/CTCF_ERV.R
/usr/lib64/R/library/chipseq/Scripts/CopyNumber.Rnw
/usr/lib64/R/library/chipseq/Scripts/Islands.Rnw
/usr/lib64/R/library/chipseq/Scripts/MyoD.R
/usr/lib64/R/library/chipseq/Scripts/PairedEndComparison.Rnw
/usr/lib64/R/library/chipseq/Scripts/PeakContextHuman.Rnw
/usr/lib64/R/library/chipseq/Scripts/PeakContextMouse.Rnw
/usr/lib64/R/library/chipseq/Scripts/PeakCutoff.Rnw
/usr/lib64/R/library/chipseq/Scripts/PeakModel.Rnw
/usr/lib64/R/library/chipseq/Scripts/PeakReproducibility.Rnw
/usr/lib64/R/library/chipseq/Scripts/PeaksByCopyNumber.Rnw
/usr/lib64/R/library/chipseq/Scripts/RateComparison.Rnw
/usr/lib64/R/library/chipseq/Scripts/ReadAndSave54.R
/usr/lib64/R/library/chipseq/Scripts/ReadAndSaveCTCF.R
/usr/lib64/R/library/chipseq/Scripts/ReadAndSaveData.R
/usr/lib64/R/library/chipseq/Scripts/ReadAndSaveSimulation.R
/usr/lib64/R/library/chipseq/Scripts/SolexaSim.R
/usr/lib64/R/library/chipseq/Scripts/abc.rda
/usr/lib64/R/library/chipseq/Scripts/antibody_comparison.R
/usr/lib64/R/library/chipseq/Scripts/dePeaks.R
/usr/lib64/R/library/chipseq/Scripts/diffpeak.R
/usr/lib64/R/library/chipseq/Scripts/diffpeaks.R
/usr/lib64/R/library/chipseq/Scripts/estimate_fragment_size.R
/usr/lib64/R/library/chipseq/Scripts/fibroblasts.R
/usr/lib64/R/library/chipseq/Scripts/figs
/usr/lib64/R/library/chipseq/Scripts/getIsochores.R
/usr/lib64/R/library/chipseq/Scripts/hmm.R
/usr/lib64/R/library/chipseq/Scripts/human-islands.R
/usr/lib64/R/library/chipseq/Scripts/isochore_comparison.R
/usr/lib64/R/library/chipseq/Scripts/isochores.mm9.rda
/usr/lib64/R/library/chipseq/Scripts/negbinomial.R
/usr/lib64/R/library/chipseq/Scripts/peakContext.R
/usr/lib64/R/library/chipseq/Scripts/peak_mle.R
/usr/lib64/R/library/chipseq/Scripts/poisson.R
/usr/lib64/R/library/chipseq/Scripts/simulate.R
/usr/lib64/R/library/chipseq/Scripts/singletons.Rnw
/usr/lib64/R/library/chipseq/Scripts/solexa54.R
/usr/lib64/R/library/chipseq/data/cstest.rda
/usr/lib64/R/library/chipseq/data/datalist
/usr/lib64/R/library/chipseq/doc/Workflow.R
/usr/lib64/R/library/chipseq/doc/Workflow.Rnw
/usr/lib64/R/library/chipseq/doc/Workflow.pdf
/usr/lib64/R/library/chipseq/doc/index.html
/usr/lib64/R/library/chipseq/help/AnIndex
/usr/lib64/R/library/chipseq/help/aliases.rds
/usr/lib64/R/library/chipseq/help/chipseq.rdb
/usr/lib64/R/library/chipseq/help/chipseq.rdx
/usr/lib64/R/library/chipseq/help/paths.rds
/usr/lib64/R/library/chipseq/html/00Index.html
/usr/lib64/R/library/chipseq/html/R.css
/usr/lib64/R/library/chipseq/html/chipseqFilter.html
/usr/lib64/R/library/chipseq/html/coverageplot.html
/usr/lib64/R/library/chipseq/html/cstest.html
/usr/lib64/R/library/chipseq/html/diffPeakSummary.html
/usr/lib64/R/library/chipseq/html/estimate.mean.fraglen.html
/usr/lib64/R/library/chipseq/html/islandDepthPlot.html
/usr/lib64/R/library/chipseq/html/laneSubsample.html
/usr/lib64/R/library/chipseq/html/peakCutoff.html
/usr/lib64/R/library/chipseq/html/peakSummary-methods.html
/usr/lib64/R/library/chipseq/html/subsetSummary.html
/usr/lib64/R/library/chipseq/libs/chipseq.so

Changelog

2015-07-13 - Denis Silakov <denis.silakov@rosalab.ru> 1.18.0-1
- (4c433b2) Upload tarball

See Also

Package Description
R-chron-2.3.47-1-rosa2014.1.x86_64.rpm Chronological objects which can handle dates and times
R-circular-0.4.7-1-rosa2014.1.x86_64.rpm Circular Statistics
R-coin-1.0.24-2-rosa2014.1.x86_64.rpm Conditional Inference Procedures in a Permutation Test Framework
R-corpcor-1.6.7-2-rosa2014.1.noarch.rpm Efficient Estimation of Covariance and (Partial) Correlation
R-corrgram-1.7-2-rosa2014.1.noarch.rpm Plot a correlogram
R-deldir-0.1.9-1-rosa2014.1.x86_64.rpm Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
R-denstrip-1.5.3-1-rosa2014.1.noarch.rpm Density strips and other methods for compactly illustrating distributions
R-descr-1.1.1-2-rosa2014.1.x86_64.rpm Descriptive statistics
R-digest-0.6.8-2-rosa2014.1.x86_64.rpm Create cryptographic hash digests of R objects
R-diptest-0.75.7-2-rosa2014.1.x86_64.rpm Hartigan's dip test statistic for unimodality - corrected code
R-doBy-4.5.13-1-rosa2014.1.x86_64.rpm Groupwise summary statistics, general linear contrasts, population means, etc
R-doMC-1.3.3-2-rosa2014.1.noarch.rpm Foreach parallel adaptor for the multicore package
R-doParallel-1.0.8-1-rosa2014.1.x86_64.rpm Foreach parallel adaptor for the parallel package
R-doSNOW-1.0.12-2-rosa2014.1.noarch.rpm Foreach parallel adaptor for the snow package
R-e1071-1.6.4-2-rosa2014.1.x86_64.rpm Misc Functions of the Department of Statistics (e1071), TU Wien
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