R-GenomicRanges-1.20.5-3-rosa2016.1.i586.rpm


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Description

R-GenomicRanges - Representation and manipulation of genomic intervals

Property Value
Distribution ROSA 2016.1
Repository ROSA Contrib i586
Package filename R-GenomicRanges-1.20.5-3-rosa2016.1.i586.rpm
Package name R-GenomicRanges
Package version 1.20.5
Package release 3-rosa2016.1
Package architecture i586
Package type rpm
Category Sciences/Mathematics
Homepage http://bioconductor.org/packages/release/bioc/html/GenomicRanges.html
License Artistic-2.0
Maintainer -
Download size 1.39 MB
Installed size 2.38 MB
The ability to efficiently store genomic annotations and alignments is
playing a central role when it comes to analyze high-throughput sequencing
data (a.k.a. NGS data). The package defines general purpose containers for
storing genomic intervals as well as more specialized containers for
storing alignments against a reference genome.

Alternatives

Package Version Architecture Repository
R-GenomicRanges-1.28.3-1-rosa2016.1.x86_64.rpm 1.28.3 x86_64 ROSA Contrib Updates
R-GenomicRanges-1.28.3-1-rosa2016.1.i586.rpm 1.28.3 i586 ROSA Contrib Updates
R-GenomicRanges-1.20.5-3-rosa2016.1.x86_64.rpm 1.20.5 x86_64 ROSA Contrib
R-GenomicRanges - - -

Requires

Name Value
R-GenomeInfoDb -
R-GenomicRanges -
R-IRanges -
R-RUnit -
R-XVector -
R-methods -
libR.so -
libc.so.6 -
libc.so.6(GLIBC_2.1.3) -

Provides

Name Value
GenomicRanges.so -
R-GenomicRanges == 1.20.5-3:2016.1

Download

Type URL
Mirror mirror.rosalab.ru
Binary Package R-GenomicRanges-1.20.5-3-rosa2016.1.i586.rpm
Source Package R-GenomicRanges-1.20.5-3.src.rpm

Install Howto

  1. Enable ROSA Contrib repository on Install and Remove Software
  2. Update packages list:
    # urpmi.update -a
  3. Install R-GenomicRanges rpm package:
    # urpmi R-GenomicRanges

Files

Path
/usr/lib/R/library/GenomicRanges/CITATION
/usr/lib/R/library/GenomicRanges/DESCRIPTION
/usr/lib/R/library/GenomicRanges/INDEX
/usr/lib/R/library/GenomicRanges/NAMESPACE
/usr/lib/R/library/GenomicRanges/NEWS
/usr/lib/R/library/GenomicRanges/Meta/Rd.rds
/usr/lib/R/library/GenomicRanges/Meta/hsearch.rds
/usr/lib/R/library/GenomicRanges/Meta/links.rds
/usr/lib/R/library/GenomicRanges/Meta/nsInfo.rds
/usr/lib/R/library/GenomicRanges/Meta/package.rds
/usr/lib/R/library/GenomicRanges/Meta/vignette.rds
/usr/lib/R/library/GenomicRanges/R/GenomicRanges
/usr/lib/R/library/GenomicRanges/R/GenomicRanges.rdb
/usr/lib/R/library/GenomicRanges/R/GenomicRanges.rdx
/usr/lib/R/library/GenomicRanges/doc/ExtendingGenomicRanges.R
/usr/lib/R/library/GenomicRanges/doc/ExtendingGenomicRanges.Rnw
/usr/lib/R/library/GenomicRanges/doc/ExtendingGenomicRanges.pdf
/usr/lib/R/library/GenomicRanges/doc/GRanges_and_GRangesList_slides.R
/usr/lib/R/library/GenomicRanges/doc/GRanges_and_GRangesList_slides.Rnw
/usr/lib/R/library/GenomicRanges/doc/GRanges_and_GRangesList_slides.pdf
/usr/lib/R/library/GenomicRanges/doc/GenomicRangesHOWTOs.R
/usr/lib/R/library/GenomicRanges/doc/GenomicRangesHOWTOs.Rnw
/usr/lib/R/library/GenomicRanges/doc/GenomicRangesHOWTOs.pdf
/usr/lib/R/library/GenomicRanges/doc/GenomicRangesIntroduction.R
/usr/lib/R/library/GenomicRanges/doc/GenomicRangesIntroduction.Rnw
/usr/lib/R/library/GenomicRanges/doc/GenomicRangesIntroduction.pdf
/usr/lib/R/library/GenomicRanges/doc/index.html
/usr/lib/R/library/GenomicRanges/extdata/feature_frags.txt
/usr/lib/R/library/GenomicRanges/help/AnIndex
/usr/lib/R/library/GenomicRanges/help/GenomicRanges.rdb
/usr/lib/R/library/GenomicRanges/help/GenomicRanges.rdx
/usr/lib/R/library/GenomicRanges/help/aliases.rds
/usr/lib/R/library/GenomicRanges/help/paths.rds
/usr/lib/R/library/GenomicRanges/html/00Index.html
/usr/lib/R/library/GenomicRanges/html/DelegatingGenomicRanges-class.html
/usr/lib/R/library/GenomicRanges/html/GIntervalTree-class.html
/usr/lib/R/library/GenomicRanges/html/GNCList-class.html
/usr/lib/R/library/GenomicRanges/html/GRanges-class.html
/usr/lib/R/library/GenomicRanges/html/GRangesList-class.html
/usr/lib/R/library/GenomicRanges/html/GRangesMapping-class.html
/usr/lib/R/library/GenomicRanges/html/GenomicRanges-comparison.html
/usr/lib/R/library/GenomicRanges/html/GenomicRangesList-class.html
/usr/lib/R/library/GenomicRanges/html/R.css
/usr/lib/R/library/GenomicRanges/html/SummarizedExperiment-class.html
/usr/lib/R/library/GenomicRanges/html/absoluteRanges.html
/usr/lib/R/library/GenomicRanges/html/constraint.html
/usr/lib/R/library/GenomicRanges/html/coverage-methods.html
/usr/lib/R/library/GenomicRanges/html/findOverlaps-methods.html
/usr/lib/R/library/GenomicRanges/html/inter-range-methods.html
/usr/lib/R/library/GenomicRanges/html/intra-range-methods.html
/usr/lib/R/library/GenomicRanges/html/makeGRangesFromDataFrame.html
/usr/lib/R/library/GenomicRanges/html/makeSummarizedExperimentFromExpressionSet.html
/usr/lib/R/library/GenomicRanges/html/mapCoords-methods.html
/usr/lib/R/library/GenomicRanges/html/mappingFunctions.html
/usr/lib/R/library/GenomicRanges/html/nearest-methods.html
/usr/lib/R/library/GenomicRanges/html/phicoef.html
/usr/lib/R/library/GenomicRanges/html/range-squeezers.html
/usr/lib/R/library/GenomicRanges/html/setops-methods.html
/usr/lib/R/library/GenomicRanges/html/strand-utils.html
/usr/lib/R/library/GenomicRanges/html/tile-methods.html
/usr/lib/R/library/GenomicRanges/html/tileGenome.html
/usr/lib/R/library/GenomicRanges/libs/GenomicRanges.so
/usr/lib/R/library/GenomicRanges/scripts/timing_overlaps.R
/usr/lib/R/library/GenomicRanges/unitTests/test_GRanges-class.R
/usr/lib/R/library/GenomicRanges/unitTests/test_GRangesList-class.R
/usr/lib/R/library/GenomicRanges/unitTests/test_SummarizedExperiment-class.R
/usr/lib/R/library/GenomicRanges/unitTests/test_SummarizedExperiment-rowData-methods.R
/usr/lib/R/library/GenomicRanges/unitTests/test_coverage-methods.R
/usr/lib/R/library/GenomicRanges/unitTests/test_findOverlaps-methods.R
/usr/lib/R/library/GenomicRanges/unitTests/test_inter-range-methods.R
/usr/lib/R/library/GenomicRanges/unitTests/test_intra-range-methods.R
/usr/lib/R/library/GenomicRanges/unitTests/test_makeGRangesFromDataFrame.R
/usr/lib/R/library/GenomicRanges/unitTests/test_nearest-methods.R
/usr/lib/R/library/GenomicRanges/unitTests/test_setops-methods.R

Changelog

2017-02-17 - Andrey Bondrov <andrey.bondrov@rosalab.ru> 1.20.5-3
- (57994e2) MassBuild#1257: Increase release tag

See Also

Package Description
R-HSAUR-1.3.6-3-rosa2016.1.i586.rpm A Handbook of Statistical Analyses Using R
R-HSAUR2-1.1.14-3-rosa2016.1.i586.rpm A Handbook of Statistical Analyses Using R (2nd Edition)
R-Hmisc-3.16.0-4-rosa2016.1.i586.rpm Harrell Miscellaneous
R-Homo.sapiens-1.1.2-4-rosa2016.1.noarch.rpm Annotation package for the Homo.sapiens object
R-IRanges-2.2.5-5-rosa2016.1.i586.rpm Infrastructure for manipulating intervals on sequences
R-ISwR-2.0_6-5-rosa2016.1.noarch.rpm Introductory Statistics with R
R-JGR-1.7.16-4-rosa2016.1.noarch.rpm JGR - Java GUI for R
R-JavaGD-0.6.1-4-rosa2016.1.i586.rpm Java Graphics Device
R-KEGG.db-2.10.1-4-rosa2016.1.noarch.rpm A set of annotation maps for KEGG
R-Kendall-2.2-4-rosa2016.1.i586.rpm Kendall rank correlation and Mann-Kendall trend test
R-LearnBayes-2.15-4-rosa2016.1.noarch.rpm Functions for Learning Bayesian Inference
R-MBESS-3.3.3-6-rosa2016.1.noarch.rpm MBESS
R-MCMCpack-1.3.9-2-rosa2016.1.i586.rpm Markov chain Monte Carlo (MCMC) Package
R-MEMSS-0.9.2-4-rosa2016.1.noarch.rpm Data sets from Mixed-effects Models in S
R-MPV-1.38-4-rosa2016.1.noarch.rpm Data Sets from Montgomery, Peck and Vining's Book
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