R-ape-3.1.2-4-rosa2016.1.i586.rpm


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Description

R-ape - Analyses of Phylogenetics and Evolution

Property Value
Distribution ROSA 2016.1
Repository ROSA Contrib i586
Package filename R-ape-3.1.2-4-rosa2016.1.i586.rpm
Package name R-ape
Package version 3.1.2
Package release 4-rosa2016.1
Package architecture i586
Package type rpm
Category Sciences/Mathematics
Homepage http://cran.r-project.org/web/packages/ape/index.html
License GPL (>= 2)
Maintainer -
Download size 1.31 MB
Installed size 2.04 MB
ape provides functions for reading, writing, plotting, and manipulating
phylogenetic trees, analyses of comparative data in a phylogenetic
framework, analyses of diversification and macroevolution, computing
distances from allelic and nucleotide data, reading nucleotide sequences,
and several tools such as Mantel's test, computation of minimum spanning
tree, generalized skyline plots, estimation of absolute evolutionary rates
and clock-like trees using mean path lengths, non-parametric rate
smoothing and penalized likelihood. Phylogeny estimation can be done with
the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods
handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the
corresponding triangle method).

Alternatives

Package Version Architecture Repository
R-ape-3.1.2-4-rosa2016.1.x86_64.rpm 3.1.2 x86_64 ROSA Contrib
R-ape - - -

Requires

Name Value
R-expm -
R-gee -
R-lattice -
R-nlme -
libR.so -
libc.so.6 -
libc.so.6(GLIBC_2.0) -
libc.so.6(GLIBC_2.1.3) -
libc.so.6(GLIBC_2.3.4) -
libc.so.6(GLIBC_2.4) -
liblapack.so.3 -
libm.so.6 -
libm.so.6(GLIBC_2.0) -

Provides

Name Value
R-ape == 3.1.2-4:2016.1
ape.so -

Download

Type URL
Mirror mirror.rosalab.ru
Binary Package R-ape-3.1.2-4-rosa2016.1.i586.rpm
Source Package R-ape-3.1.2-4.src.rpm

Install Howto

  1. Enable ROSA Contrib repository on Install and Remove Software
  2. Update packages list:
    # urpmi.update -a
  3. Install R-ape rpm package:
    # urpmi R-ape

Files

Path
/usr/lib/R/library/ape/CITATION
/usr/lib/R/library/ape/DESCRIPTION
/usr/lib/R/library/ape/INDEX
/usr/lib/R/library/ape/NAMESPACE
/usr/lib/R/library/ape/NEWS
/usr/lib/R/library/ape/Meta/Rd.rds
/usr/lib/R/library/ape/Meta/data.rds
/usr/lib/R/library/ape/Meta/hsearch.rds
/usr/lib/R/library/ape/Meta/links.rds
/usr/lib/R/library/ape/Meta/nsInfo.rds
/usr/lib/R/library/ape/Meta/package.rds
/usr/lib/R/library/ape/Meta/vignette.rds
/usr/lib/R/library/ape/R/ape
/usr/lib/R/library/ape/R/ape.rdb
/usr/lib/R/library/ape/R/ape.rdx
/usr/lib/R/library/ape/data/HP.links.rda
/usr/lib/R/library/ape/data/bird.families.rda
/usr/lib/R/library/ape/data/bird.orders.rda
/usr/lib/R/library/ape/data/carnivora.csv.gz
/usr/lib/R/library/ape/data/chiroptera.rda
/usr/lib/R/library/ape/data/cynipids.rda
/usr/lib/R/library/ape/data/gopher.D.rda
/usr/lib/R/library/ape/data/hivtree.newick.rda
/usr/lib/R/library/ape/data/hivtree.table.txt.gz
/usr/lib/R/library/ape/data/landplants.newick.rda
/usr/lib/R/library/ape/data/lice.D.rda
/usr/lib/R/library/ape/data/lmorigin.ex1.rda
/usr/lib/R/library/ape/data/lmorigin.ex2.rda
/usr/lib/R/library/ape/data/mat3.RData
/usr/lib/R/library/ape/data/mat5M3ID.RData
/usr/lib/R/library/ape/data/mat5Mrand.RData
/usr/lib/R/library/ape/data/opsin.newick.rda
/usr/lib/R/library/ape/data/woodmouse.rda
/usr/lib/R/library/ape/doc/MoranI.R
/usr/lib/R/library/ape/doc/MoranI.Rnw
/usr/lib/R/library/ape/doc/MoranI.pdf
/usr/lib/R/library/ape/doc/index.html
/usr/lib/R/library/ape/help/AnIndex
/usr/lib/R/library/ape/help/aliases.rds
/usr/lib/R/library/ape/help/ape.rdb
/usr/lib/R/library/ape/help/ape.rdx
/usr/lib/R/library/ape/help/paths.rds
/usr/lib/R/library/ape/html/00Index.html
/usr/lib/R/library/ape/html/CADM.global.html
/usr/lib/R/library/ape/html/DNAbin.html
/usr/lib/R/library/ape/html/Initialize.corPhyl.html
/usr/lib/R/library/ape/html/LTT.html
/usr/lib/R/library/ape/html/MPR.html
/usr/lib/R/library/ape/html/MoranI.html
/usr/lib/R/library/ape/html/R.css
/usr/lib/R/library/ape/html/SDM.html
/usr/lib/R/library/ape/html/ace.html
/usr/lib/R/library/ape/html/add.scale.bar.html
/usr/lib/R/library/ape/html/additive.html
/usr/lib/R/library/ape/html/alex.html
/usr/lib/R/library/ape/html/all.equal.phylo.html
/usr/lib/R/library/ape/html/ape-internal.html
/usr/lib/R/library/ape/html/ape-package.html
/usr/lib/R/library/ape/html/as.alignment.html
/usr/lib/R/library/ape/html/as.bitsplits.html
/usr/lib/R/library/ape/html/as.matching.html
/usr/lib/R/library/ape/html/as.phylo.formula.html
/usr/lib/R/library/ape/html/as.phylo.html
/usr/lib/R/library/ape/html/axisPhylo.html
/usr/lib/R/library/ape/html/balance.html
/usr/lib/R/library/ape/html/base.freq.html
/usr/lib/R/library/ape/html/bd.ext.html
/usr/lib/R/library/ape/html/bd.time.html
/usr/lib/R/library/ape/html/bind.tree.html
/usr/lib/R/library/ape/html/bionj.html
/usr/lib/R/library/ape/html/bird.families.html
/usr/lib/R/library/ape/html/bird.orders.html
/usr/lib/R/library/ape/html/birthdeath.html
/usr/lib/R/library/ape/html/boot.phylo.html
/usr/lib/R/library/ape/html/branching.times.html
/usr/lib/R/library/ape/html/c.phylo.html
/usr/lib/R/library/ape/html/carnivora.html
/usr/lib/R/library/ape/html/cherry.html
/usr/lib/R/library/ape/html/chiroptera.html
/usr/lib/R/library/ape/html/chronoMPL.html
/usr/lib/R/library/ape/html/chronopl.html
/usr/lib/R/library/ape/html/chronos.html
/usr/lib/R/library/ape/html/clustal.html
/usr/lib/R/library/ape/html/coalescent.intervals.html
/usr/lib/R/library/ape/html/collapse.singles.html
/usr/lib/R/library/ape/html/collapsed.intervals.html
/usr/lib/R/library/ape/html/compar.cheverud.html
/usr/lib/R/library/ape/html/compar.gee.html
/usr/lib/R/library/ape/html/compar.lynch.html
/usr/lib/R/library/ape/html/compar.ou.html
/usr/lib/R/library/ape/html/compute.brlen.html
/usr/lib/R/library/ape/html/compute.brtime.html
/usr/lib/R/library/ape/html/consensus.html
/usr/lib/R/library/ape/html/cophenetic.phylo.html
/usr/lib/R/library/ape/html/cophyloplot.html
/usr/lib/R/library/ape/html/corBlomberg.html
/usr/lib/R/library/ape/html/corBrownian.html
/usr/lib/R/library/ape/html/corClasses.html
/usr/lib/R/library/ape/html/corGrafen.html
/usr/lib/R/library/ape/html/corMartins.html
/usr/lib/R/library/ape/html/corPagel.html
/usr/lib/R/library/ape/html/correlogram.formula.html
/usr/lib/R/library/ape/html/cynipids.html
/usr/lib/R/library/ape/html/dbd.html
/usr/lib/R/library/ape/html/del.gaps.html
/usr/lib/R/library/ape/html/delta.plot.html
/usr/lib/R/library/ape/html/dist.dna.html
/usr/lib/R/library/ape/html/dist.gene.html
/usr/lib/R/library/ape/html/dist.topo.html
/usr/lib/R/library/ape/html/diversi.gof.html
/usr/lib/R/library/ape/html/diversi.time.html
/usr/lib/R/library/ape/html/diversity.contrast.test.html
/usr/lib/R/library/ape/html/drop.tip.html
/usr/lib/R/library/ape/html/edges.html
/usr/lib/R/library/ape/html/evonet.html
/usr/lib/R/library/ape/html/ewLasso.html
/usr/lib/R/library/ape/html/fastme.html
/usr/lib/R/library/ape/html/gammaStat.html
/usr/lib/R/library/ape/html/hivtree.html
/usr/lib/R/library/ape/html/howmanytrees.html
/usr/lib/R/library/ape/html/identify.phylo.html
/usr/lib/R/library/ape/html/image.DNAbin.html
/usr/lib/R/library/ape/html/is.binary.tree.html
/usr/lib/R/library/ape/html/is.compatible.html
/usr/lib/R/library/ape/html/is.monophyletic.html
/usr/lib/R/library/ape/html/is.ultrametric.html
/usr/lib/R/library/ape/html/kronoviz.html
/usr/lib/R/library/ape/html/ladderize.html
/usr/lib/R/library/ape/html/landplants.html
/usr/lib/R/library/ape/html/lmorigin.html
/usr/lib/R/library/ape/html/ltt.plot.html
/usr/lib/R/library/ape/html/makeLabel.html
/usr/lib/R/library/ape/html/makeNodeLabel.html
/usr/lib/R/library/ape/html/mantel.test.html
/usr/lib/R/library/ape/html/mat3.html
/usr/lib/R/library/ape/html/mat5M3ID.html
/usr/lib/R/library/ape/html/mat5Mrand.html
/usr/lib/R/library/ape/html/matexpo.html
/usr/lib/R/library/ape/html/mcconwaysims.test.html
/usr/lib/R/library/ape/html/mcmc.popsize.html
/usr/lib/R/library/ape/html/mixedFontLabel.html
/usr/lib/R/library/ape/html/mrca.html
/usr/lib/R/library/ape/html/mst.html
/usr/lib/R/library/ape/html/multi2di.html
/usr/lib/R/library/ape/html/multiphylo.html
/usr/lib/R/library/ape/html/mvr.html
/usr/lib/R/library/ape/html/nj.html
/usr/lib/R/library/ape/html/njs.html
/usr/lib/R/library/ape/html/node.depth.html
/usr/lib/R/library/ape/html/nodelabels.html
/usr/lib/R/library/ape/html/opsin.html
/usr/lib/R/library/ape/html/parafit.html
/usr/lib/R/library/ape/html/pcoa.html
/usr/lib/R/library/ape/html/phydataplot.html
/usr/lib/R/library/ape/html/phymltest.html
/usr/lib/R/library/ape/html/pic.html
/usr/lib/R/library/ape/html/pic.ortho.html
/usr/lib/R/library/ape/html/plot.correlogram.html
/usr/lib/R/library/ape/html/plot.phylo.html
/usr/lib/R/library/ape/html/plot.varcomp.html
/usr/lib/R/library/ape/html/print.phylo.html
/usr/lib/R/library/ape/html/rTraitCont.html
/usr/lib/R/library/ape/html/rTraitDisc.html
/usr/lib/R/library/ape/html/rTraitMult.html
/usr/lib/R/library/ape/html/read.GenBank.html
/usr/lib/R/library/ape/html/read.caic.html
/usr/lib/R/library/ape/html/read.dna.html
/usr/lib/R/library/ape/html/read.nexus.data.html
/usr/lib/R/library/ape/html/read.nexus.html
/usr/lib/R/library/ape/html/read.tree.html
/usr/lib/R/library/ape/html/reorder.phylo.html
/usr/lib/R/library/ape/html/richness.yule.test.html
/usr/lib/R/library/ape/html/rlineage.html
/usr/lib/R/library/ape/html/root.html
/usr/lib/R/library/ape/html/rotate.html
/usr/lib/R/library/ape/html/rtree.html
/usr/lib/R/library/ape/html/seg.sites.html
/usr/lib/R/library/ape/html/skyline.html
/usr/lib/R/library/ape/html/skylineplot.html
/usr/lib/R/library/ape/html/slowinskiguyer.test.html
/usr/lib/R/library/ape/html/speciesTree.html
/usr/lib/R/library/ape/html/stree.html
/usr/lib/R/library/ape/html/subtreeplot.html
/usr/lib/R/library/ape/html/subtrees.html
/usr/lib/R/library/ape/html/summary.phylo.html
/usr/lib/R/library/ape/html/treePop.html
/usr/lib/R/library/ape/html/trex.html
/usr/lib/R/library/ape/html/triangMtd.html
/usr/lib/R/library/ape/html/unique.multiPhylo.html
/usr/lib/R/library/ape/html/varCompPhylip.html
/usr/lib/R/library/ape/html/varcomp.html
/usr/lib/R/library/ape/html/vcv.phylo.html
/usr/lib/R/library/ape/html/weight.taxo.html
/usr/lib/R/library/ape/html/where.html
/usr/lib/R/library/ape/html/which.edge.html
/usr/lib/R/library/ape/html/woodmouse.html
/usr/lib/R/library/ape/html/write.dna.html
/usr/lib/R/library/ape/html/write.nexus.data.html
/usr/lib/R/library/ape/html/write.nexus.html
/usr/lib/R/library/ape/html/write.tree.html
/usr/lib/R/library/ape/html/yule.cov.html
/usr/lib/R/library/ape/html/yule.html
/usr/lib/R/library/ape/html/yule.time.html
/usr/lib/R/library/ape/html/zoom.html
/usr/lib/R/library/ape/libs/ape.so

Changelog

2017-02-17 - Andrey Bondrov <andrey.bondrov@rosalab.ru> 3.1.2-4
- (455bc56) MassBuild#1257: Increase release tag

See Also

Package Description
R-aplpack-1.3.0-4-rosa2016.1.i586.rpm Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, slider functions
R-arm-1.7.07-3-rosa2016.1.noarch.rpm Data Analysis Using Regression and Multilevel/Hierarchical Models
R-arules-1.1.7-3-rosa2016.1.i586.rpm Mining Association Rules and Frequent Itemsets
R-arulesViz-0.1.9-4-rosa2016.1.i586.rpm arulesViz - Visualizing Association Rules and Frequent Itemsets
R-assertthat-0.1-3-rosa2016.1.noarch.rpm Easy pre and post assertions
R-base64enc-0.1.2-3-rosa2016.1.i586.rpm Tools for base64 encoding
R-bdsmatrix-1.3.1-5-rosa2016.1.i586.rpm Routines for Block Diagonal Symmetric matrices
R-biclust-1.0.2-5-rosa2016.1.i586.rpm BiCluster Algorithms
R-biglm-0.9.1-6-rosa2016.1.i586.rpm bounded memory linear and generalized linear models
R-biomaRt-2.18.0-4-rosa2016.1.i586.rpm Interface to BioMart databases (e.g. Ensembl, COSMIC ,Wormbase and Gramene)
R-biovizBase-1.16.0-2-rosa2016.1.i586.rpm Basic graphic utilities for visualization of genomic data
R-bit-1.1_12-3-rosa2016.1.i586.rpm A S3 Class for Vectors of 64bit Integers
R-bit64-0.9.5-3-rosa2016.1.i586.rpm A S3 Class for Vectors of 64bit Integers
R-bitops-1.0.6-4-rosa2016.1.i586.rpm Functions for Bitwise operations
R-boot-1.3.17-3-rosa2016.1.noarch.rpm Bootstrap Functions (originally by Angelo Canty for S)
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