R-biomaRt-2.18.0-4-rosa2016.1.i586.rpm


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Description

R-biomaRt - Interface to BioMart databases (e.g. Ensembl, COSMIC ,Wormbase and Gramene)

Property Value
Distribution ROSA 2016.1
Repository ROSA Contrib i586
Package filename R-biomaRt-2.18.0-4-rosa2016.1.i586.rpm
Package name R-biomaRt
Package version 2.18.0
Package release 4-rosa2016.1
Package architecture i586
Package type rpm
Category Sciences/Mathematics
Homepage http://bioconductor.org/packages/release/bioc/html/biomaRt.html
License Artistic-2.0
Maintainer -
Download size 341.72 KB
Installed size 459.10 KB
In recent years a wealth of biological data has become available in public
data repositories. Easy access to these valuable data resources and firm
integration with data analysis is needed for comprehensive bioinformatics
data analysis.  biomaRt provides an interface to a growing collection of
databases implementing the BioMart software suite
(http://www.biomart.org). The package enables retrieval of large amounts
of data in a uniform way without the need to know the underlying database
schemas or write complex SQL queries. Examples of BioMart databases are
Ensembl, COSMIC, Uniprot, HGNC, Gramene, Wormbase and dbSNP mapped to
Ensembl. These major databases give biomaRt users direct access to a
diverse set of data and enable a wide range of powerful online queries
from gene annotation to database mining.

Alternatives

Package Version Architecture Repository
R-biomaRt-2.18.0-4-rosa2016.1.x86_64.rpm 2.18.0 x86_64 ROSA Contrib
R-biomaRt - - -

Requires

Name Value
R-RCurl -
R-XML -
R-annotate -
R-methods -

Provides

Name Value
R-biomaRt == 2.18.0-4:2016.1

Download

Type URL
Mirror mirror.rosalab.ru
Binary Package R-biomaRt-2.18.0-4-rosa2016.1.i586.rpm
Source Package R-biomaRt-2.18.0-4.src.rpm

Install Howto

  1. Enable ROSA Contrib repository on Install and Remove Software
  2. Update packages list:
    # urpmi.update -a
  3. Install R-biomaRt rpm package:
    # urpmi R-biomaRt

Files

Path
/usr/lib/R/library/biomaRt/CITATION
/usr/lib/R/library/biomaRt/DESCRIPTION
/usr/lib/R/library/biomaRt/INDEX
/usr/lib/R/library/biomaRt/NAMESPACE
/usr/lib/R/library/biomaRt/Meta/Rd.rds
/usr/lib/R/library/biomaRt/Meta/hsearch.rds
/usr/lib/R/library/biomaRt/Meta/links.rds
/usr/lib/R/library/biomaRt/Meta/nsInfo.rds
/usr/lib/R/library/biomaRt/Meta/package.rds
/usr/lib/R/library/biomaRt/R/biomaRt
/usr/lib/R/library/biomaRt/R/biomaRt.rdb
/usr/lib/R/library/biomaRt/R/biomaRt.rdx
/usr/lib/R/library/biomaRt/doc/biomaRt.R
/usr/lib/R/library/biomaRt/doc/biomaRt.Rnw
/usr/lib/R/library/biomaRt/doc/biomaRt.pdf
/usr/lib/R/library/biomaRt/help/AnIndex
/usr/lib/R/library/biomaRt/help/aliases.rds
/usr/lib/R/library/biomaRt/help/biomaRt.rdb
/usr/lib/R/library/biomaRt/help/biomaRt.rdx
/usr/lib/R/library/biomaRt/help/paths.rds
/usr/lib/R/library/biomaRt/html/00Index.html
/usr/lib/R/library/biomaRt/html/Mart-class.html
/usr/lib/R/library/biomaRt/html/NP2009code.html
/usr/lib/R/library/biomaRt/html/R.css
/usr/lib/R/library/biomaRt/html/attributePages.html
/usr/lib/R/library/biomaRt/html/exportFASTA.html
/usr/lib/R/library/biomaRt/html/filterOptions.html
/usr/lib/R/library/biomaRt/html/filterType.html
/usr/lib/R/library/biomaRt/html/getBM.html
/usr/lib/R/library/biomaRt/html/getBMlist.html
/usr/lib/R/library/biomaRt/html/getGene.html
/usr/lib/R/library/biomaRt/html/getLDS.html
/usr/lib/R/library/biomaRt/html/getSequence.html
/usr/lib/R/library/biomaRt/html/getXML.html
/usr/lib/R/library/biomaRt/html/listAttributes.html
/usr/lib/R/library/biomaRt/html/listDatasets.html
/usr/lib/R/library/biomaRt/html/listFilters.html
/usr/lib/R/library/biomaRt/html/listMarts.html
/usr/lib/R/library/biomaRt/html/useDataset.html
/usr/lib/R/library/biomaRt/html/useMart.html
/usr/lib/R/library/biomaRt/scripts/Integration-NP.R

Changelog

2017-02-17 - Andrey Bondrov <andrey.bondrov@rosalab.ru> 2.18.0-4
- (53590b0) MassBuild#1257: Increase release tag

See Also

Package Description
R-biovizBase-1.16.0-2-rosa2016.1.i586.rpm Basic graphic utilities for visualization of genomic data
R-bit-1.1_12-3-rosa2016.1.i586.rpm A S3 Class for Vectors of 64bit Integers
R-bit64-0.9.5-3-rosa2016.1.i586.rpm A S3 Class for Vectors of 64bit Integers
R-bitops-1.0.6-4-rosa2016.1.i586.rpm Functions for Bitwise operations
R-boot-1.3.17-3-rosa2016.1.noarch.rpm Bootstrap Functions (originally by Angelo Canty for S)
R-brew-1.0.6-3-rosa2016.1.i586.rpm Templating Framework for Report Generation
R-brglm-0.5.9-3-rosa2016.1.i586.rpm Bias reduction in binomial-response generalized linear models
R-ca-0.58-3-rosa2016.1.noarch.rpm Simple, Multiple and Joint Correspondence Analysis
R-caTools-1.17.1-4-rosa2016.1.i586.rpm Tools: moving window statistics, GIF, Base64, ROC AUC, etc
R-cairoDevice-2.22-5-rosa2016.1.i586.rpm Cairo-based cross-platform antialiased graphics device driver
R-candisc-0.6.5-4-rosa2016.1.noarch.rpm Visualizing Generalized Canonical Discriminant and Correlation Analysis
R-car-2.0.25-3-rosa2016.1.noarch.rpm Companion to Applied Regression
R-caret-6.0.35-4-rosa2016.1.i586.rpm Classification and Regression Training
R-catdata-1.2.1-6-rosa2016.1.i586.rpm Categorical Data
R-cba-0.2.14-4-rosa2016.1.i586.rpm Clustering for Business Analytics
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