R-biovizBase-1.16.0-2-rosa2016.1.i586.rpm


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Description

R-biovizBase - Basic graphic utilities for visualization of genomic data

Property Value
Distribution ROSA 2016.1
Repository ROSA Contrib i586
Package filename R-biovizBase-1.16.0-2-rosa2016.1.i586.rpm
Package name R-biovizBase
Package version 1.16.0
Package release 2-rosa2016.1
Package architecture i586
Package type rpm
Category Sciences/Mathematics
Homepage None
License Artistic-2.0
Maintainer -
Download size 2.41 MB
Installed size 2.81 MB
The biovizBase package is designed to provide a set of utilities, color
schemes and conventions for genomic data. It serves as the base for
various high-level packages for biological data visualization. This saves
development effort and encourages consistency.

Alternatives

Package Version Architecture Repository
R-biovizBase-1.16.0-2-rosa2016.1.x86_64.rpm 1.16.0 x86_64 ROSA Contrib
R-biovizBase - - -

Requires

Name Value
R-AnnotationDbi -
R-BSgenome -
R-BSgenome.Hsapiens.UCSC.hg19 -
R-BiocGenerics -
R-Biostrings -
R-GenomeInfoDb -
R-GenomicAlignments -
R-GenomicFeatures -
R-GenomicRanges -
R-Hmisc -
R-IRanges -
R-RColorBrewer -
R-Rsamtools -
R-S4Vectors -
R-TxDb.Hsapiens.UCSC.hg19.knownGene -
R-VariantAnnotation -
R-dichromat -
R-grDevices -
R-methods -
R-rtracklayer -
R-scales -
R-stats -
libR.so -
libc.so.6 -
libc.so.6(GLIBC_2.1.3) -

Provides

Name Value
R-biovizBase == 1.16.0-2:2016.1
biovizBase.so -

Download

Type URL
Mirror mirror.rosalab.ru
Binary Package R-biovizBase-1.16.0-2-rosa2016.1.i586.rpm
Source Package R-biovizBase-1.16.0-2.src.rpm

Install Howto

  1. Enable ROSA Contrib repository on Install and Remove Software
  2. Update packages list:
    # urpmi.update -a
  3. Install R-biovizBase rpm package:
    # urpmi R-biovizBase

Files

Path
/usr/lib/R/library/biovizBase/DESCRIPTION
/usr/lib/R/library/biovizBase/INDEX
/usr/lib/R/library/biovizBase/NAMESPACE
/usr/lib/R/library/biovizBase/NEWS
/usr/lib/R/library/biovizBase/Meta/Rd.rds
/usr/lib/R/library/biovizBase/Meta/data.rds
/usr/lib/R/library/biovizBase/Meta/hsearch.rds
/usr/lib/R/library/biovizBase/Meta/links.rds
/usr/lib/R/library/biovizBase/Meta/nsInfo.rds
/usr/lib/R/library/biovizBase/Meta/package.rds
/usr/lib/R/library/biovizBase/Meta/vignette.rds
/usr/lib/R/library/biovizBase/R/biovizBase
/usr/lib/R/library/biovizBase/R/biovizBase.rdb
/usr/lib/R/library/biovizBase/R/biovizBase.rdx
/usr/lib/R/library/biovizBase/data/CRC.rda
/usr/lib/R/library/biovizBase/data/crc1.GeRL.rda
/usr/lib/R/library/biovizBase/data/darned_hg19_subset500.rda
/usr/lib/R/library/biovizBase/data/genesymbol.rda
/usr/lib/R/library/biovizBase/data/hg19Ideogram.rda
/usr/lib/R/library/biovizBase/data/hg19IdeogramCyto.rda
/usr/lib/R/library/biovizBase/data/ideo.rda
/usr/lib/R/library/biovizBase/data/ideoCyto.rda
/usr/lib/R/library/biovizBase/doc/index.html
/usr/lib/R/library/biovizBase/doc/intro.R
/usr/lib/R/library/biovizBase/doc/intro.Rnw
/usr/lib/R/library/biovizBase/doc/intro.pdf
/usr/lib/R/library/biovizBase/examples/color.R
/usr/lib/R/library/biovizBase/examples/data-gen.R
/usr/lib/R/library/biovizBase/examples/test.R
/usr/lib/R/library/biovizBase/extdata/17-1409-CEU-brca1.vcf.bgz
/usr/lib/R/library/biovizBase/extdata/17-1409-CEU-brca1.vcf.bgz.tbi
/usr/lib/R/library/biovizBase/extdata/SRR027894subRBM17.bam
/usr/lib/R/library/biovizBase/extdata/SRR027894subRBM17.bam.bai
/usr/lib/R/library/biovizBase/extdata/crc-rearrangment.csv
/usr/lib/R/library/biovizBase/extdata/crc1-missense.csv
/usr/lib/R/library/biovizBase/extdata/plink.assoc.sub.txt
/usr/lib/R/library/biovizBase/extdata/wg-brca1.sorted.bam
/usr/lib/R/library/biovizBase/extdata/wg-brca1.sorted.bam.bai
/usr/lib/R/library/biovizBase/help/AnIndex
/usr/lib/R/library/biovizBase/help/aliases.rds
/usr/lib/R/library/biovizBase/help/biovizBase.rdb
/usr/lib/R/library/biovizBase/help/biovizBase.rdx
/usr/lib/R/library/biovizBase/help/paths.rds
/usr/lib/R/library/biovizBase/html/00Index.html
/usr/lib/R/library/biovizBase/html/CRC.html
/usr/lib/R/library/biovizBase/html/GCcontent.html
/usr/lib/R/library/biovizBase/html/R.css
/usr/lib/R/library/biovizBase/html/addStepping-method.html
/usr/lib/R/library/biovizBase/html/aes-utils.html
/usr/lib/R/library/biovizBase/html/biovizBase-package.html
/usr/lib/R/library/biovizBase/html/colorBlindSafePal.html
/usr/lib/R/library/biovizBase/html/containLetters.html
/usr/lib/R/library/biovizBase/html/crc1.GeRL.html
/usr/lib/R/library/biovizBase/html/crunch-method.html
/usr/lib/R/library/biovizBase/html/darned_hg19_subset500.html
/usr/lib/R/library/biovizBase/html/estimateCoverage-method.html
/usr/lib/R/library/biovizBase/html/flatGrl.html
/usr/lib/R/library/biovizBase/html/genesymbol.html
/usr/lib/R/library/biovizBase/html/getBioColor.html
/usr/lib/R/library/biovizBase/html/getFormalNames.html
/usr/lib/R/library/biovizBase/html/getGaps.html
/usr/lib/R/library/biovizBase/html/getIdeoGR.html
/usr/lib/R/library/biovizBase/html/getIdeogram.html
/usr/lib/R/library/biovizBase/html/getScale.html
/usr/lib/R/library/biovizBase/html/hg19Ideogram.html
/usr/lib/R/library/biovizBase/html/hg19IdeogramCyto.html
/usr/lib/R/library/biovizBase/html/ideo.html
/usr/lib/R/library/biovizBase/html/ideoCyto.html
/usr/lib/R/library/biovizBase/html/isIdeogram.html
/usr/lib/R/library/biovizBase/html/isMatchedWithModel.html
/usr/lib/R/library/biovizBase/html/isSimpleIdeogram.html
/usr/lib/R/library/biovizBase/html/labs.html
/usr/lib/R/library/biovizBase/html/maxGap-method.html
/usr/lib/R/library/biovizBase/html/mold-method.html
/usr/lib/R/library/biovizBase/html/pileupAsGRanges.html
/usr/lib/R/library/biovizBase/html/pileupGRangesAsVariantTable.html
/usr/lib/R/library/biovizBase/html/plotColorLegend.html
/usr/lib/R/library/biovizBase/html/scale.html
/usr/lib/R/library/biovizBase/html/showColor.html
/usr/lib/R/library/biovizBase/html/shrinkageFun-method.html
/usr/lib/R/library/biovizBase/html/splitByFacets-method.html
/usr/lib/R/library/biovizBase/html/strip_formula_dots.html
/usr/lib/R/library/biovizBase/html/subsetArgsByFormals.html
/usr/lib/R/library/biovizBase/html/transform.html
/usr/lib/R/library/biovizBase/html/transformGRangesForEvenSpace.html
/usr/lib/R/library/biovizBase/libs/biovizBase.so

Changelog

2016-12-09 - Andrey Bondrov <andrey.bondrov@rosalab.ru> 1.16.0-2
- (6b5f5af) MassBuild#1190: Increase release tag

See Also

Package Description
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R-bit64-0.9.5-3-rosa2016.1.i586.rpm A S3 Class for Vectors of 64bit Integers
R-bitops-1.0.6-4-rosa2016.1.i586.rpm Functions for Bitwise operations
R-boot-1.3.17-3-rosa2016.1.noarch.rpm Bootstrap Functions (originally by Angelo Canty for S)
R-brew-1.0.6-3-rosa2016.1.i586.rpm Templating Framework for Report Generation
R-brglm-0.5.9-3-rosa2016.1.i586.rpm Bias reduction in binomial-response generalized linear models
R-ca-0.58-3-rosa2016.1.noarch.rpm Simple, Multiple and Joint Correspondence Analysis
R-caTools-1.17.1-4-rosa2016.1.i586.rpm Tools: moving window statistics, GIF, Base64, ROC AUC, etc
R-cairoDevice-2.22-5-rosa2016.1.i586.rpm Cairo-based cross-platform antialiased graphics device driver
R-candisc-0.6.5-4-rosa2016.1.noarch.rpm Visualizing Generalized Canonical Discriminant and Correlation Analysis
R-car-2.0.25-3-rosa2016.1.noarch.rpm Companion to Applied Regression
R-caret-6.0.35-4-rosa2016.1.i586.rpm Classification and Regression Training
R-catdata-1.2.1-6-rosa2016.1.i586.rpm Categorical Data
R-cba-0.2.14-4-rosa2016.1.i586.rpm Clustering for Business Analytics
R-cem-1.1.16-4-rosa2016.1.noarch.rpm Coarsened Exact Matching
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