R-chipseq-1.18.0-3-rosa2016.1.i586.rpm


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Description

R-chipseq - chipseq: A package for analyzing chipseq data

Property Value
Distribution ROSA 2016.1
Repository ROSA Contrib i586
Package name R-chipseq
Package version 1.18.0
Package release 3-rosa2016.1
Package architecture i586
Package type rpm
Installed size 2.48 MB
Download size 2.16 MB
Official Mirror mirror.rosalab.ru
Tools for helping process short read data for chipseq experiments

Alternatives

Package Version Architecture Repository
R-chipseq-1.18.0-3-rosa2016.1.x86_64.rpm 1.18.0 x86_64 ROSA Contrib
R-chipseq - - -

Requires

Name Value
R-BSgenome -
R-BiocGenerics -
R-GenomicFeatures -
R-GenomicRanges -
R-IRanges -
R-S4Vectors -
R-ShortRead -
R-TxDb.Mmusculus.UCSC.mm9.knownGene -
R-lattice -
R-methods -
R-stats -
libR.so -
libc.so.6 -
libc.so.6(GLIBC_2.1.3) -

Provides

Name Value
R-chipseq == 1.18.0-3:2016.1
chipseq.so -

Download

Type URL
Binary Package R-chipseq-1.18.0-3-rosa2016.1.i586.rpm
Source Package R-chipseq-1.18.0-3.src.rpm

Install Howto

  1. Enable ROSA Contrib repository on Install and Remove Software
  2. Update packages list:
    # urpmi.update -a
  3. Install R-chipseq rpm package:
    # urpmi R-chipseq

Files

Path
/usr/lib/R/library/chipseq/DESCRIPTION
/usr/lib/R/library/chipseq/INDEX
/usr/lib/R/library/chipseq/NAMESPACE
/usr/lib/R/library/chipseq/Meta/Rd.rds
/usr/lib/R/library/chipseq/Meta/data.rds
/usr/lib/R/library/chipseq/Meta/hsearch.rds
/usr/lib/R/library/chipseq/Meta/links.rds
/usr/lib/R/library/chipseq/Meta/nsInfo.rds
/usr/lib/R/library/chipseq/Meta/package.rds
/usr/lib/R/library/chipseq/Meta/vignette.rds
/usr/lib/R/library/chipseq/R/chipseq
/usr/lib/R/library/chipseq/R/chipseq.rdb
/usr/lib/R/library/chipseq/R/chipseq.rdx
/usr/lib/R/library/chipseq/Scripts/AntibodyComparison.Rnw
/usr/lib/R/library/chipseq/Scripts/CTCFBindingSites.R
/usr/lib/R/library/chipseq/Scripts/CTCF_ERV.R
/usr/lib/R/library/chipseq/Scripts/CopyNumber.Rnw
/usr/lib/R/library/chipseq/Scripts/Islands.Rnw
/usr/lib/R/library/chipseq/Scripts/MyoD.R
/usr/lib/R/library/chipseq/Scripts/PairedEndComparison.Rnw
/usr/lib/R/library/chipseq/Scripts/PeakContextHuman.Rnw
/usr/lib/R/library/chipseq/Scripts/PeakContextMouse.Rnw
/usr/lib/R/library/chipseq/Scripts/PeakCutoff.Rnw
/usr/lib/R/library/chipseq/Scripts/PeakModel.Rnw
/usr/lib/R/library/chipseq/Scripts/PeakReproducibility.Rnw
/usr/lib/R/library/chipseq/Scripts/PeaksByCopyNumber.Rnw
/usr/lib/R/library/chipseq/Scripts/RateComparison.Rnw
/usr/lib/R/library/chipseq/Scripts/ReadAndSave54.R
/usr/lib/R/library/chipseq/Scripts/ReadAndSaveCTCF.R
/usr/lib/R/library/chipseq/Scripts/ReadAndSaveData.R
/usr/lib/R/library/chipseq/Scripts/ReadAndSaveSimulation.R
/usr/lib/R/library/chipseq/Scripts/SolexaSim.R
/usr/lib/R/library/chipseq/Scripts/abc.rda
/usr/lib/R/library/chipseq/Scripts/antibody_comparison.R
/usr/lib/R/library/chipseq/Scripts/dePeaks.R
/usr/lib/R/library/chipseq/Scripts/diffpeak.R
/usr/lib/R/library/chipseq/Scripts/diffpeaks.R
/usr/lib/R/library/chipseq/Scripts/estimate_fragment_size.R
/usr/lib/R/library/chipseq/Scripts/fibroblasts.R
/usr/lib/R/library/chipseq/Scripts/figs
/usr/lib/R/library/chipseq/Scripts/getIsochores.R
/usr/lib/R/library/chipseq/Scripts/hmm.R
/usr/lib/R/library/chipseq/Scripts/human-islands.R
/usr/lib/R/library/chipseq/Scripts/isochore_comparison.R
/usr/lib/R/library/chipseq/Scripts/isochores.mm9.rda
/usr/lib/R/library/chipseq/Scripts/negbinomial.R
/usr/lib/R/library/chipseq/Scripts/peakContext.R
/usr/lib/R/library/chipseq/Scripts/peak_mle.R
/usr/lib/R/library/chipseq/Scripts/poisson.R
/usr/lib/R/library/chipseq/Scripts/simulate.R
/usr/lib/R/library/chipseq/Scripts/singletons.Rnw
/usr/lib/R/library/chipseq/Scripts/solexa54.R
/usr/lib/R/library/chipseq/data/cstest.rda
/usr/lib/R/library/chipseq/data/datalist
/usr/lib/R/library/chipseq/doc/Workflow.R
/usr/lib/R/library/chipseq/doc/Workflow.Rnw
/usr/lib/R/library/chipseq/doc/Workflow.pdf
/usr/lib/R/library/chipseq/doc/index.html
/usr/lib/R/library/chipseq/help/AnIndex
/usr/lib/R/library/chipseq/help/aliases.rds
/usr/lib/R/library/chipseq/help/chipseq.rdb
/usr/lib/R/library/chipseq/help/chipseq.rdx
/usr/lib/R/library/chipseq/help/paths.rds
/usr/lib/R/library/chipseq/html/00Index.html
/usr/lib/R/library/chipseq/html/R.css
/usr/lib/R/library/chipseq/html/chipseqFilter.html
/usr/lib/R/library/chipseq/html/coverageplot.html
/usr/lib/R/library/chipseq/html/cstest.html
/usr/lib/R/library/chipseq/html/diffPeakSummary.html
/usr/lib/R/library/chipseq/html/estimate.mean.fraglen.html
/usr/lib/R/library/chipseq/html/islandDepthPlot.html
/usr/lib/R/library/chipseq/html/laneSubsample.html
/usr/lib/R/library/chipseq/html/peakCutoff.html
/usr/lib/R/library/chipseq/html/peakSummary-methods.html
/usr/lib/R/library/chipseq/html/subsetSummary.html
/usr/lib/R/library/chipseq/libs/chipseq.so

Changelog

2017-03-02 - Andrey Bondrov <andrey.bondrov@rosalab.ru> 1.18.0-3
- (dddd1ca) MassBuild#1273: Increase release tag

See Also

Package Description
R-chron-2.3.45-4-rosa2016.1.i586.rpm Chronological objects which can handle dates and times
R-circular-0.4.7-3-rosa2016.1.i586.rpm Circular Statistics
R-clue-0.3.48-4-rosa2016.1.i586.rpm Cluster ensembles
R-clv-0.3.2.1-3-rosa2016.1.i586.rpm Cluster Validation Techniques
R-cmprsk-2.2.7-4-rosa2016.1.i586.rpm Subdistribution Analysis of Competing Risks
R-coda-0.19.1-1-rosa2016.1.noarch.rpm Output analysis and diagnostics for MCMC
R-coin-1.0.24-4-rosa2016.1.i586.rpm Conditional Inference Procedures in a Permutation Test Framework
R-colorspace-1.2.4-5-rosa2016.1.i586.rpm Color Space Manipulation
R-combinat-0.0_8-5-rosa2016.1.noarch.rpm combinatorics utilities
R-corpcor-1.6.7-4-rosa2016.1.noarch.rpm Efficient Estimation of Covariance and (Partial) Correlation
R-corrgram-1.10-1-rosa2016.1.noarch.rpm Plot a correlogram
R-corrplot-0.73-5-rosa2016.1.noarch.rpm Visualization of a correlation matrix
R-coxme-2.2.3-5-rosa2016.1.i586.rpm Mixed Effects Cox Models
R-cran-leaps-2.9-5-rosa2016.1.i586.rpm Regression subset for R
R-crayon-1.3.2-3-rosa2016.1.noarch.rpm Colored Terminal Output
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