R-ggbio-1.16.0-2-rosa2016.1.i586.rpm


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Description

R-ggbio - Visualization tools for genomic data

Property Value
Distribution ROSA 2016.1
Repository ROSA Contrib i586
Package filename R-ggbio-1.16.0-2-rosa2016.1.i586.rpm
Package name R-ggbio
Package version 1.16.0
Package release 2-rosa2016.1
Package architecture i586
Package type rpm
Category Sciences/Mathematics
Homepage http://bioconductor.org/packages/release/bioc/html/ggbio.html
License Artistic-2.0
Maintainer -
Download size 718.36 KB
Installed size 1.17 MB
The ggbio package extends and specializes the grammar of graphics for
biological data. The graphics are designed to answer common scientific
questions, in particular those often asked of high throughput genomics
data. All core Bioconductor data structures are supported, where
appropriate. The package supports detailed views of particular genomic
regions, as well as genome-wide overviews. Supported overviews include
ideograms and grand linear views. High-level plots include sequence
fragment length, edge-linked interval to data view, mismatch pileup, and
several splicing summaries.

Alternatives

Package Version Architecture Repository
R-ggbio-1.16.0-2-rosa2016.1.x86_64.rpm 1.16.0 x86_64 ROSA Contrib
R-ggbio - - -

Requires

Name Value
R-BSgenome -
R-BSgenome.Hsapiens.UCSC.hg19 -
R-Biobase -
R-BiocGenerics -
R-BiocStyle -
R-Biostrings -
R-GGally -
R-GenomeInfoDb -
R-GenomicAlignments -
R-GenomicFeatures -
R-GenomicRanges -
R-Hmisc -
R-Homo.sapiens -
R-IRanges -
R-OrganismDbi -
R-Rsamtools -
R-S4Vectors -
R-TxDb.Hsapiens.UCSC.hg19.knownGene -
R-TxDb.Mmusculus.UCSC.mm9.knownGene -
R-VariantAnnotation -
R-biovizBase -
R-chipseq -
R-ggplot2 -
R-grDevices -
R-graphics -
R-grid -
R-gridExtra -
R-gtable -
R-knitr -
R-methods -
R-reshape2 -
R-rtracklayer -
R-scales -
R-stats -
R-testthat -
R-utils -
R-vsn -

Provides

Name Value
R-ggbio == 1.16.0-2:2016.1

Download

Type URL
Mirror mirror.rosalab.ru
Binary Package R-ggbio-1.16.0-2-rosa2016.1.i586.rpm
Source Package R-ggbio-1.16.0-2.src.rpm

Install Howto

  1. Enable ROSA Contrib repository on Install and Remove Software
  2. Update packages list:
    # urpmi.update -a
  3. Install R-ggbio rpm package:
    # urpmi R-ggbio

Files

Path
/usr/lib/R/library/ggbio/CITATION
/usr/lib/R/library/ggbio/DESCRIPTION
/usr/lib/R/library/ggbio/INDEX
/usr/lib/R/library/ggbio/NAMESPACE
/usr/lib/R/library/ggbio/NEWS
/usr/lib/R/library/ggbio/Meta/Rd.rds
/usr/lib/R/library/ggbio/Meta/hsearch.rds
/usr/lib/R/library/ggbio/Meta/links.rds
/usr/lib/R/library/ggbio/Meta/nsInfo.rds
/usr/lib/R/library/ggbio/Meta/package.rds
/usr/lib/R/library/ggbio/Meta/vignette.rds
/usr/lib/R/library/ggbio/R/ggbio
/usr/lib/R/library/ggbio/R/ggbio.rdb
/usr/lib/R/library/ggbio/R/ggbio.rdx
/usr/lib/R/library/ggbio/doc/ggbio.Rnw
/usr/lib/R/library/ggbio/doc/ggbio.pdf
/usr/lib/R/library/ggbio/doc/index.html
/usr/lib/R/library/ggbio/example/GGbio-class.R
/usr/lib/R/library/ggbio/help/AnIndex
/usr/lib/R/library/ggbio/help/aliases.rds
/usr/lib/R/library/ggbio/help/ggbio.rdb
/usr/lib/R/library/ggbio/help/ggbio.rdx
/usr/lib/R/library/ggbio/help/paths.rds
/usr/lib/R/library/ggbio/html/00Index.html
/usr/lib/R/library/ggbio/html/Grob-class.html
/usr/lib/R/library/ggbio/html/Plot-class.html
/usr/lib/R/library/ggbio/html/R.css
/usr/lib/R/library/ggbio/html/Tracked-class.html
/usr/lib/R/library/ggbio/html/arrangeGrobByParsingLegend.html
/usr/lib/R/library/ggbio/html/autoplot-method.html
/usr/lib/R/library/ggbio/html/geom_alignment-method.html
/usr/lib/R/library/ggbio/html/geom_arch-method.html
/usr/lib/R/library/ggbio/html/geom_arrow-method.html
/usr/lib/R/library/ggbio/html/geom_arrowrect-method.html
/usr/lib/R/library/ggbio/html/geom_bar-method.html
/usr/lib/R/library/ggbio/html/geom_chevron-method.html
/usr/lib/R/library/ggbio/html/geom_rect-method.html
/usr/lib/R/library/ggbio/html/geom_segment-method.html
/usr/lib/R/library/ggbio/html/ggbio-class.html
/usr/lib/R/library/ggbio/html/ggplot-method.html
/usr/lib/R/library/ggbio/html/ggsave.html
/usr/lib/R/library/ggbio/html/layout_circle-method.html
/usr/lib/R/library/ggbio/html/layout_karyogram-method.html
/usr/lib/R/library/ggbio/html/nav.html
/usr/lib/R/library/ggbio/html/plotFragLength.html
/usr/lib/R/library/ggbio/html/plotGrandLinear.html
/usr/lib/R/library/ggbio/html/plotRangesLinkedToData.html
/usr/lib/R/library/ggbio/html/plotSingleChrom.html
/usr/lib/R/library/ggbio/html/plotSpliceSum.html
/usr/lib/R/library/ggbio/html/plotStackedOverview.html
/usr/lib/R/library/ggbio/html/rescale-method.html
/usr/lib/R/library/ggbio/html/scale_fill_fold_change.html
/usr/lib/R/library/ggbio/html/scale_fill_giemsa.html
/usr/lib/R/library/ggbio/html/scale_x_sequnit.html
/usr/lib/R/library/ggbio/html/stat_aggregate-method.html
/usr/lib/R/library/ggbio/html/stat_bin-method.html
/usr/lib/R/library/ggbio/html/stat_coverage-method.html
/usr/lib/R/library/ggbio/html/stat_gene-method.html
/usr/lib/R/library/ggbio/html/stat_identity-method.html
/usr/lib/R/library/ggbio/html/stat_mismatch-method.html
/usr/lib/R/library/ggbio/html/stat_reduce-method.html
/usr/lib/R/library/ggbio/html/stat_slice-method.html
/usr/lib/R/library/ggbio/html/stat_stepping-method.html
/usr/lib/R/library/ggbio/html/stat_table-method.html
/usr/lib/R/library/ggbio/html/theme.html
/usr/lib/R/library/ggbio/html/tracks.html

Changelog

2016-12-09 - Andrey Bondrov <andrey.bondrov@rosalab.ru> 1.16.0-2
- (c19e57d) MassBuild#1190: Increase release tag

See Also

Package Description
R-ggdendro-0.1.15-3-rosa2016.1.i586.rpm Tools for extracting dendrogram and tree diagram plot data for use with ggplot
R-ggm-2.3-3-rosa2016.1.i586.rpm Functions for graphical Markov models
R-ggplot2-1.0.1-3-rosa2016.1.noarch.rpm An implementation of the Grammar of Graphics
R-glasso-1.8-3-rosa2016.1.i586.rpm Graphical lasso- estimation of Gaussian graphical models
R-glmmML-1.0-4-rosa2016.1.i586.rpm Generalized linear models with clustering
R-glmnet-1.9.8-4-rosa2016.1.i586.rpm Lasso and elastic-net regularized generalized linear models
R-globaltest-5.16.0-4-rosa2016.1.i586.rpm Testing groups of covariates/features for association with a response variable
R-gmodels-2.15.4.1-4-rosa2016.1.noarch.rpm Various R programming tools for model fitting
R-gnm-1.0.7-5-rosa2016.1.i586.rpm Generalized Nonlinear Models
R-goftest-1.0.2-3-rosa2016.1.i586.rpm Classical Goodness-of-Fit Tests for Univariate Distributions
R-golubEsets-1.6.0-3-rosa2016.1.noarch.rpm exprSets for golub leukemia data
R-gpclib-1.5.5-4-rosa2016.1.i586.rpm General Polygon Clipping Library for R
R-gplots-2.17.0-4-rosa2016.1.i586.rpm Various R programming tools for plotting data
R-graph-1.40.1-4-rosa2016.1.i586.rpm graph: A package to handle graph data structures
R-gridBase-0.4.7-4-rosa2016.1.i586.rpm Integration of base and grid graphics
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