R-GenomeGraphs-1.22.0-4-rosa2016.1.x86_64.rpm ROSA 2016.1 Download

Description

R-GenomeGraphs - Plotting genomic information from Ensembl

Property	Value
Distribution	ROSA 2016.1
Repository	ROSA Contrib x86_64
Package name	R-GenomeGraphs
Package version	1.22.0
Package release	4-rosa2016.1
Package architecture	x86_64
Package type	rpm
Installed size	1.16 MB
Download size	837.80 KB
Official Mirror	mirror.rosalab.ru

Genomic data analyses requires integrated visualization of known genomic
information and new experimental data.  GenomeGraphs uses the biomaRt
package to perform live annotation queries to Ensembl and translates this
to e.g. gene/transcript structures in viewports of the grid graphics
package. This results in genomic information plotted together with your
data.  Another strength of GenomeGraphs is to plot different data types
such as array CGH, gene expression, sequencing and other data, together in
one plot using the same genome coordinate system.

Alternatives

Package	Version	Architecture	Repository
R-GenomeGraphs-1.22.0-4-rosa2016.1.i586.rpm	1.22.0	i586	ROSA Contrib
R-GenomeGraphs	-	-	-

Requires

Name	Value
R-biomaRt	-
R-grid	-
R-methods	-

Provides

Name	Value
R-GenomeGraphs	== 1.22.0-4:2016.1

Download

Type	URL
Binary Package	R-GenomeGraphs-1.22.0-4-rosa2016.1.x86_64.rpm
Source Package	R-GenomeGraphs-1.22.0-4.src.rpm

Install Howto

Enable ROSA Contrib repository on Install and Remove Software"
Update packages list:
```
# urpmi.update -a
```
Install R-GenomeGraphs rpm package:
```
# urpmi R-GenomeGraphs
```

Files

Path
/usr/lib64/R/library/GenomeGraphs/DESCRIPTION
/usr/lib64/R/library/GenomeGraphs/INDEX
/usr/lib64/R/library/GenomeGraphs/NAMESPACE
/usr/lib64/R/library/GenomeGraphs/NEWS
/usr/lib64/R/library/GenomeGraphs/Meta/Rd.rds
/usr/lib64/R/library/GenomeGraphs/Meta/data.rds
/usr/lib64/R/library/GenomeGraphs/Meta/hsearch.rds
/usr/lib64/R/library/GenomeGraphs/Meta/links.rds
/usr/lib64/R/library/GenomeGraphs/Meta/nsInfo.rds
/usr/lib64/R/library/GenomeGraphs/Meta/package.rds
/usr/lib64/R/library/GenomeGraphs/R/GenomeGraphs
/usr/lib64/R/library/GenomeGraphs/R/GenomeGraphs.rdb
/usr/lib64/R/library/GenomeGraphs/R/GenomeGraphs.rdx
/usr/lib64/R/library/GenomeGraphs/data/exampleData.rda
/usr/lib64/R/library/GenomeGraphs/data/ideogram.rda
/usr/lib64/R/library/GenomeGraphs/data/seqDataEx.rda
/usr/lib64/R/library/GenomeGraphs/data/unrData.rda
/usr/lib64/R/library/GenomeGraphs/doc/GenomeGraphs.R
/usr/lib64/R/library/GenomeGraphs/doc/GenomeGraphs.Rnw
/usr/lib64/R/library/GenomeGraphs/doc/GenomeGraphs.pdf
/usr/lib64/R/library/GenomeGraphs/extra/dummyData.R
/usr/lib64/R/library/GenomeGraphs/help/AnIndex
/usr/lib64/R/library/GenomeGraphs/help/GenomeGraphs.rdb
/usr/lib64/R/library/GenomeGraphs/help/GenomeGraphs.rdx
/usr/lib64/R/library/GenomeGraphs/help/aliases.rds
/usr/lib64/R/library/GenomeGraphs/help/paths.rds
/usr/lib64/R/library/GenomeGraphs/html/00Index.html
/usr/lib64/R/library/GenomeGraphs/html/AnnotationTrack-class.html
/usr/lib64/R/library/GenomeGraphs/html/BaseTrack-class.html
/usr/lib64/R/library/GenomeGraphs/html/DisplayPars-class.html
/usr/lib64/R/library/GenomeGraphs/html/DisplayPars.html
/usr/lib64/R/library/GenomeGraphs/html/ExonArray-class.html
/usr/lib64/R/library/GenomeGraphs/html/Gene-class.html
/usr/lib64/R/library/GenomeGraphs/html/GeneModel-class.html
/usr/lib64/R/library/GenomeGraphs/html/GeneRegion-class.html
/usr/lib64/R/library/GenomeGraphs/html/GenericArray-class.html
/usr/lib64/R/library/GenomeGraphs/html/GenomeAxis-class.html
/usr/lib64/R/library/GenomeGraphs/html/HighlightRegion-class.html
/usr/lib64/R/library/GenomeGraphs/html/Ideogram-class.html
/usr/lib64/R/library/GenomeGraphs/html/ImplementsTrackOverlay-class.html
/usr/lib64/R/library/GenomeGraphs/html/Legend-class.html
/usr/lib64/R/library/GenomeGraphs/html/MappedRead-class.html
/usr/lib64/R/library/GenomeGraphs/html/Overlay-class.html
/usr/lib64/R/library/GenomeGraphs/html/R.css
/usr/lib64/R/library/GenomeGraphs/html/RectangleOverlay-class.html
/usr/lib64/R/library/GenomeGraphs/html/Segmentation-class.html
/usr/lib64/R/library/GenomeGraphs/html/Smoothing-class.html
/usr/lib64/R/library/GenomeGraphs/html/TextOverlay-class.html
/usr/lib64/R/library/GenomeGraphs/html/Title-class.html
/usr/lib64/R/library/GenomeGraphs/html/TrackOverlay-class.html
/usr/lib64/R/library/GenomeGraphs/html/Transcript-class.html
/usr/lib64/R/library/GenomeGraphs/html/TranscriptRegion-class.html
/usr/lib64/R/library/GenomeGraphs/html/cn.html
/usr/lib64/R/library/GenomeGraphs/html/drawGD.html
/usr/lib64/R/library/GenomeGraphs/html/drawTrackOverlay-methods.html
/usr/lib64/R/library/GenomeGraphs/html/exonProbePos.html
/usr/lib64/R/library/GenomeGraphs/html/gdObject-class.html
/usr/lib64/R/library/GenomeGraphs/html/gdPlot.html
/usr/lib64/R/library/GenomeGraphs/html/geneBiomart.html
/usr/lib64/R/library/GenomeGraphs/html/geneRegionBiomart.html
/usr/lib64/R/library/GenomeGraphs/html/getGenomicRange.html
/usr/lib64/R/library/GenomeGraphs/html/getPar.html
/usr/lib64/R/library/GenomeGraphs/html/getSize.html
/usr/lib64/R/library/GenomeGraphs/html/ideogramTab.html
/usr/lib64/R/library/GenomeGraphs/html/intensity.html
/usr/lib64/R/library/GenomeGraphs/html/makeAnnotationTrack.html
/usr/lib64/R/library/GenomeGraphs/html/makeBaseTrack.html
/usr/lib64/R/library/GenomeGraphs/html/makeExonArray.html
/usr/lib64/R/library/GenomeGraphs/html/makeGene.html
/usr/lib64/R/library/GenomeGraphs/html/makeGeneModel.html
/usr/lib64/R/library/GenomeGraphs/html/makeGeneRegion.html
/usr/lib64/R/library/GenomeGraphs/html/makeGenericArray.html
/usr/lib64/R/library/GenomeGraphs/html/makeGenomeAxis.html
/usr/lib64/R/library/GenomeGraphs/html/makeIdeogram.html
/usr/lib64/R/library/GenomeGraphs/html/makeLegend.html
/usr/lib64/R/library/GenomeGraphs/html/makeRectangleOverlay.html
/usr/lib64/R/library/GenomeGraphs/html/makeSegmentation.html
/usr/lib64/R/library/GenomeGraphs/html/makeSmoothing.html
/usr/lib64/R/library/GenomeGraphs/html/makeTextOverlay.html
/usr/lib64/R/library/GenomeGraphs/html/makeTitle.html
/usr/lib64/R/library/GenomeGraphs/html/makeTranscript.html
/usr/lib64/R/library/GenomeGraphs/html/probestart.html
/usr/lib64/R/library/GenomeGraphs/html/segEnd.html
/usr/lib64/R/library/GenomeGraphs/html/segStart.html
/usr/lib64/R/library/GenomeGraphs/html/segments.html
/usr/lib64/R/library/GenomeGraphs/html/seqDataEx.html
/usr/lib64/R/library/GenomeGraphs/html/setPar.html
/usr/lib64/R/library/GenomeGraphs/html/showDisplayOptions.html
/usr/lib64/R/library/GenomeGraphs/html/unrData.html
/usr/lib64/R/library/GenomeGraphs/html/unrNProbes.html
/usr/lib64/R/library/GenomeGraphs/html/unrPositions.html
/usr/lib64/R/library/GenomeGraphs/html/yeastCons1.html

Changelog

2017-02-17 - Andrey Bondrov <andrey.bondrov@rosalab.ru> 1.22.0-4
- (46a5a81) MassBuild#1257: Increase release tag

Package	Description
R-GenomeInfoDb-1.4.1-3-rosa2016.1.noarch.rpm	Utilities for manipulating chromosome and other 'seqname' identifiers
R-GenomicAlignments-1.4.1-3-rosa2016.1.x86_64.rpm	Representation and manipulation of short genomic alignments
R-GenomicFeatures-1.20.1-3-rosa2016.1.x86_64.rpm	Tools for making and manipulating transcript centric annotations
R-GenomicRanges-1.20.5-3-rosa2016.1.x86_64.rpm	Representation and manipulation of genomic intervals
R-HSAUR-1.3.6-3-rosa2016.1.x86_64.rpm	A Handbook of Statistical Analyses Using R
R-HSAUR2-1.1.14-3-rosa2016.1.x86_64.rpm	A Handbook of Statistical Analyses Using R (2nd Edition)
R-Hmisc-3.16.0-4-rosa2016.1.x86_64.rpm	Harrell Miscellaneous
R-Homo.sapiens-1.1.2-4-rosa2016.1.noarch.rpm	Annotation package for the Homo.sapiens object
R-IRanges-2.2.5-5-rosa2016.1.x86_64.rpm	Infrastructure for manipulating intervals on sequences
R-ISwR-2.0_6-5-rosa2016.1.noarch.rpm	Introductory Statistics with R
R-JGR-1.7.16-4-rosa2016.1.noarch.rpm	JGR - Java GUI for R
R-JavaGD-0.6.1-4-rosa2016.1.x86_64.rpm	Java Graphics Device
R-KEGG.db-2.10.1-4-rosa2016.1.noarch.rpm	A set of annotation maps for KEGG
R-Kendall-2.2-4-rosa2016.1.x86_64.rpm	Kendall rank correlation and Mann-Kendall trend test
R-LearnBayes-2.15-4-rosa2016.1.noarch.rpm	Functions for Learning Bayesian Inference

Description

Alternatives

Requires

Provides

Download

Install Howto

Files

Changelog

See Also