R-GenomicRanges-1.28.3-1-rosa2016.1.x86_64.rpm


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Description

R-GenomicRanges - Representation and manipulation of genomic intervals

Property Value
Distribution ROSA 2016.1
Repository ROSA Contrib Updates x86_64
Package name R-GenomicRanges
Package version 1.28.3
Package release 1-rosa2016.1
Package architecture x86_64
Package type rpm
Installed size 2.09 MB
Download size 1.41 MB
Official Mirror mirror.rosalab.ru
The ability to efficiently store genomic annotations and alignments is
playing a central role when it comes to analyze high-throughput sequencing
data (a.k.a. NGS data). The package defines general purpose containers for
storing genomic intervals as well as more specialized containers for
storing alignments against a reference genome.

Alternatives

Package Version Architecture Repository
R-GenomicRanges-1.28.3-1-rosa2016.1.i586.rpm 1.28.3 i586 ROSA Contrib Updates
R-GenomicRanges-1.20.5-3-rosa2016.1.i586.rpm 1.20.5 i586 ROSA Contrib
R-GenomicRanges-1.20.5-3-rosa2016.1.x86_64.rpm 1.20.5 x86_64 ROSA Contrib
R-GenomicRanges - - -

Requires

Name Value
R-GenomeInfoDb -
R-GenomicRanges -
R-IRanges -
R-RUnit -
R-XVector -
R-methods -
libR.so()(64bit) -
libc.so.6()(64bit) -
libc.so.6(GLIBC_2.2.5)(64bit) -

Provides

Name Value
GenomicRanges.so()(64bit) -
R-GenomicRanges == 1.28.3-1:2016.1

Download

Type URL
Binary Package R-GenomicRanges-1.28.3-1-rosa2016.1.x86_64.rpm
Source Package R-GenomicRanges-1.28.3-1.src.rpm

Install Howto

  1. Enable ROSA Contrib Updates repository on Install and Remove Software
  2. Update packages list:
    # urpmi.update -a
  3. Install R-GenomicRanges rpm package:
    # urpmi R-GenomicRanges

Files

Path
/usr/lib64/R/library/GenomicRanges/CITATION
/usr/lib64/R/library/GenomicRanges/DESCRIPTION
/usr/lib64/R/library/GenomicRanges/INDEX
/usr/lib64/R/library/GenomicRanges/NAMESPACE
/usr/lib64/R/library/GenomicRanges/NEWS
/usr/lib64/R/library/GenomicRanges/Meta/Rd.rds
/usr/lib64/R/library/GenomicRanges/Meta/hsearch.rds
/usr/lib64/R/library/GenomicRanges/Meta/links.rds
/usr/lib64/R/library/GenomicRanges/Meta/nsInfo.rds
/usr/lib64/R/library/GenomicRanges/Meta/package.rds
/usr/lib64/R/library/GenomicRanges/Meta/vignette.rds
/usr/lib64/R/library/GenomicRanges/R/GenomicRanges
/usr/lib64/R/library/GenomicRanges/R/GenomicRanges.rdb
/usr/lib64/R/library/GenomicRanges/R/GenomicRanges.rdx
/usr/lib64/R/library/GenomicRanges/doc/ExtendingGenomicRanges.R
/usr/lib64/R/library/GenomicRanges/doc/ExtendingGenomicRanges.Rnw
/usr/lib64/R/library/GenomicRanges/doc/ExtendingGenomicRanges.pdf
/usr/lib64/R/library/GenomicRanges/doc/GRanges_and_GRangesList_slides.R
/usr/lib64/R/library/GenomicRanges/doc/GRanges_and_GRangesList_slides.Rnw
/usr/lib64/R/library/GenomicRanges/doc/GRanges_and_GRangesList_slides.pdf
/usr/lib64/R/library/GenomicRanges/doc/GenomicRangesHOWTOs.R
/usr/lib64/R/library/GenomicRanges/doc/GenomicRangesHOWTOs.Rnw
/usr/lib64/R/library/GenomicRanges/doc/GenomicRangesHOWTOs.pdf
/usr/lib64/R/library/GenomicRanges/doc/GenomicRangesIntroduction.R
/usr/lib64/R/library/GenomicRanges/doc/GenomicRangesIntroduction.Rnw
/usr/lib64/R/library/GenomicRanges/doc/GenomicRangesIntroduction.pdf
/usr/lib64/R/library/GenomicRanges/doc/Ten_things_slides.R
/usr/lib64/R/library/GenomicRanges/doc/Ten_things_slides.Rnw
/usr/lib64/R/library/GenomicRanges/doc/Ten_things_slides.pdf
/usr/lib64/R/library/GenomicRanges/doc/index.html
/usr/lib64/R/library/GenomicRanges/extdata/feature_frags.txt
/usr/lib64/R/library/GenomicRanges/help/AnIndex
/usr/lib64/R/library/GenomicRanges/help/GenomicRanges.rdb
/usr/lib64/R/library/GenomicRanges/help/GenomicRanges.rdx
/usr/lib64/R/library/GenomicRanges/help/aliases.rds
/usr/lib64/R/library/GenomicRanges/help/paths.rds
/usr/lib64/R/library/GenomicRanges/html/00Index.html
/usr/lib64/R/library/GenomicRanges/html/DelegatingGenomicRanges-class.html
/usr/lib64/R/library/GenomicRanges/html/GNCList-class.html
/usr/lib64/R/library/GenomicRanges/html/GPos-class.html
/usr/lib64/R/library/GenomicRanges/html/GRanges-class.html
/usr/lib64/R/library/GenomicRanges/html/GRangesList-class.html
/usr/lib64/R/library/GenomicRanges/html/GenomicRanges-comparison.html
/usr/lib64/R/library/GenomicRanges/html/GenomicRangesList-class.html
/usr/lib64/R/library/GenomicRanges/html/R.css
/usr/lib64/R/library/GenomicRanges/html/absoluteRanges.html
/usr/lib64/R/library/GenomicRanges/html/constraint.html
/usr/lib64/R/library/GenomicRanges/html/coverage-methods.html
/usr/lib64/R/library/GenomicRanges/html/findOverlaps-methods.html
/usr/lib64/R/library/GenomicRanges/html/genomicvars.html
/usr/lib64/R/library/GenomicRanges/html/inter-range-methods.html
/usr/lib64/R/library/GenomicRanges/html/intra-range-methods.html
/usr/lib64/R/library/GenomicRanges/html/makeGRangesFromDataFrame.html
/usr/lib64/R/library/GenomicRanges/html/makeGRangesListFromDataFrame.html
/usr/lib64/R/library/GenomicRanges/html/nearest-methods.html
/usr/lib64/R/library/GenomicRanges/html/phicoef.html
/usr/lib64/R/library/GenomicRanges/html/range-squeezers.html
/usr/lib64/R/library/GenomicRanges/html/setops-methods.html
/usr/lib64/R/library/GenomicRanges/html/strand-utils.html
/usr/lib64/R/library/GenomicRanges/html/tile-methods.html
/usr/lib64/R/library/GenomicRanges/html/tileGenome.html
/usr/lib64/R/library/GenomicRanges/libs/GenomicRanges.so
/usr/lib64/R/library/GenomicRanges/scripts/timing_overlaps.R
/usr/lib64/R/library/GenomicRanges/unitTests/test_GNCList-class.R
/usr/lib64/R/library/GenomicRanges/unitTests/test_GRanges-class.R
/usr/lib64/R/library/GenomicRanges/unitTests/test_GRangesList-class.R
/usr/lib64/R/library/GenomicRanges/unitTests/test_GenomicRanges-comparison.R
/usr/lib64/R/library/GenomicRanges/unitTests/test_coverage-methods.R
/usr/lib64/R/library/GenomicRanges/unitTests/test_findOverlaps-methods.R
/usr/lib64/R/library/GenomicRanges/unitTests/test_inter-range-methods.R
/usr/lib64/R/library/GenomicRanges/unitTests/test_intra-range-methods.R
/usr/lib64/R/library/GenomicRanges/unitTests/test_makeGRangesFromDataFrame.R
/usr/lib64/R/library/GenomicRanges/unitTests/test_makeGRangesListFromDataFrame.R
/usr/lib64/R/library/GenomicRanges/unitTests/test_nearest-methods.R
/usr/lib64/R/library/GenomicRanges/unitTests/test_precede_follow.R
/usr/lib64/R/library/GenomicRanges/unitTests/test_setops-methods.R

Changelog

2017-05-29 - Denis Silakov <dsilakov@virtuozzo.com> 1.28.3-1
- (123c130) Merge branch 'rosa2016.1' of https://abf.rosalinux.ru/import/R-GenomicRanges into rosa2016.1

See Also

Package Description
R-IRanges-2.10.2-1-rosa2016.1.x86_64.rpm Infrastructure for manipulating intervals on sequences
R-PFAM.db-3.4.1-1-rosa2016.1.noarch.rpm A set of protein ID mappings for PFAM
R-RSQLite-1.0.0-7-rosa2016.1.x86_64.rpm SQLite interface for R
R-Rcpp-0.12.17-1-rosa2016.1.x86_64.rpm Seamless R and C++ Integration
R-S4Vectors-0.14.2-1-rosa2016.1.x86_64.rpm S4 implementation of vectors and lists
R-SummarizedExperiment-1.4.0-1-rosa2016.1.noarch.rpm SummarizedExperiment container
R-airway-0.110.0-1-rosa2016.1.x86_64.rpm RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells
R-bibtex-0.4.2-2-rosa2016.1.x86_64.rpm Bibtex Parser
R-bigmemory-4.5.33-1-rosa2016.1.x86_64.rpm Manage Massive Matrices with Shared Memory and Memory-Mapped Files
R-bigmemory.sri-0.1.3-1-rosa2016.1.noarch.rpm A shared resource interface for Bigmemory Project packages
R-covr-2.2.2-1-rosa2016.1.x86_64.rpm Test Coverage for Packages
R-devtools-1.13.6-1-rosa2016.1.x86_64.rpm Tools to Make Developing R Packages Easier
R-digest-0.6.15-1-rosa2016.1.x86_64.rpm Create Compact Hash Digests of R Objects
R-git2r-0.21.0-1-rosa2016.1.x86_64.rpm Provides Access to Git Repositories
R-htmltools-0.3.5-4-rosa2016.1.x86_64.rpm Tools for HTML
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