R-airway-0.110.0-1-rosa2016.1.x86_64.rpm


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Description

R-airway - RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells

Property Value
Distribution ROSA 2016.1
Repository ROSA Contrib Updates x86_64
Package name R-airway
Package version 0.110.0
Package release 1-rosa2016.1
Package architecture x86_64
Package type rpm
Installed size 11.53 MB
Download size 11.21 MB
Official Mirror mirror.rosalab.ru
This package provides a RangedSummarizedExperiment object of read counts
in genes for an RNA-Seq experiment on four human airway smooth muscle cell
lines treated with dexamethasone. Details on the gene model and read
counting procedure are provided in the package vignette. The citation for
the experiment is: Himes BE, Jiang X, Wagner P, Hu R, Wang Q, Klanderman
B, Whitaker RM, Duan Q, Lasky-Su J, Nikolos C, Jester W, Johnson M,
Panettieri R Jr, Tantisira KG, Weiss ST, Lu Q. 'RNA-Seq Transcriptome
Profiling Identifies CRISPLD2 as a Glucocorticoid Responsive Gene that
Modulates Cytokine Function in Airway Smooth Muscle Cells.' PLoS One. 2014
Jun 13;9(6):e99625. PMID: 24926665. GEO: GSE52778.

Alternatives

Package Version Architecture Repository
R-airway-0.110.0-1-rosa2016.1.i586.rpm 0.110.0 i586 ROSA Contrib Updates
R-airway - - -

Requires

Name Value
R-SummarizedExperiment -

Provides

Name Value
R-airway == 0.110.0-1:2016.1

Download

Type URL
Binary Package R-airway-0.110.0-1-rosa2016.1.x86_64.rpm
Source Package R-airway-0.110.0-1.src.rpm

Install Howto

  1. Enable ROSA Contrib Updates repository on Install and Remove Software
  2. Update packages list:
    # urpmi.update -a
  3. Install R-airway rpm package:
    # urpmi R-airway

Files

Path
/usr/lib64/R/library/airway/CITATION
/usr/lib64/R/library/airway/DESCRIPTION
/usr/lib64/R/library/airway/INDEX
/usr/lib64/R/library/airway/NAMESPACE
/usr/lib64/R/library/airway/Meta/Rd.rds
/usr/lib64/R/library/airway/Meta/data.rds
/usr/lib64/R/library/airway/Meta/hsearch.rds
/usr/lib64/R/library/airway/Meta/links.rds
/usr/lib64/R/library/airway/Meta/nsInfo.rds
/usr/lib64/R/library/airway/Meta/package.rds
/usr/lib64/R/library/airway/Meta/vignette.rds
/usr/lib64/R/library/airway/data/airway.RData
/usr/lib64/R/library/airway/data/datalist
/usr/lib64/R/library/airway/doc/airway.R
/usr/lib64/R/library/airway/doc/airway.Rmd
/usr/lib64/R/library/airway/doc/airway.html
/usr/lib64/R/library/airway/doc/index.html
/usr/lib64/R/library/airway/extdata/GSE52778_series_matrix.txt
/usr/lib64/R/library/airway/extdata/Homo_sapiens.GRCh37.75_subset.gtf
/usr/lib64/R/library/airway/extdata/SRR1039508_subset.bam
/usr/lib64/R/library/airway/extdata/SRR1039509_subset.bam
/usr/lib64/R/library/airway/extdata/SRR1039512_subset.bam
/usr/lib64/R/library/airway/extdata/SRR1039513_subset.bam
/usr/lib64/R/library/airway/extdata/SRR1039516_subset.bam
/usr/lib64/R/library/airway/extdata/SRR1039517_subset.bam
/usr/lib64/R/library/airway/extdata/SRR1039520_subset.bam
/usr/lib64/R/library/airway/extdata/SRR1039521_subset.bam
/usr/lib64/R/library/airway/extdata/SraRunInfo_SRP033351.csv
/usr/lib64/R/library/airway/extdata/sample_table.csv
/usr/lib64/R/library/airway/help/AnIndex
/usr/lib64/R/library/airway/help/airway.rdb
/usr/lib64/R/library/airway/help/airway.rdx
/usr/lib64/R/library/airway/help/aliases.rds
/usr/lib64/R/library/airway/help/paths.rds
/usr/lib64/R/library/airway/html/00Index.html
/usr/lib64/R/library/airway/html/R.css
/usr/lib64/R/library/airway/html/airway.html

Changelog

2017-06-01 - Denis Silakov <dsilakov@virtuozzo.com> 0.110.0-1
- (3d54066) Disable debug

See Also

Package Description
R-bibtex-0.4.2-2-rosa2016.1.x86_64.rpm Bibtex Parser
R-bigmemory-4.5.33-1-rosa2016.1.x86_64.rpm Manage Massive Matrices with Shared Memory and Memory-Mapped Files
R-bigmemory.sri-0.1.3-1-rosa2016.1.noarch.rpm A shared resource interface for Bigmemory Project packages
R-covr-2.2.2-1-rosa2016.1.x86_64.rpm Test Coverage for Packages
R-devtools-1.13.6-1-rosa2016.1.x86_64.rpm Tools to Make Developing R Packages Easier
R-digest-0.6.15-1-rosa2016.1.x86_64.rpm Create Compact Hash Digests of R Objects
R-git2r-0.21.0-1-rosa2016.1.x86_64.rpm Provides Access to Git Repositories
R-htmltools-0.3.5-4-rosa2016.1.x86_64.rpm Tools for HTML
R-httr-1.3.1-1-rosa2016.1.noarch.rpm Tools for Working with URLs and HTTP
R-lazyeval-0.2.0-7-rosa2016.1.x86_64.rpm Lazy (Non-Standard) Evaluation
R-mail-1.0-1-rosa2016.1.noarch.rpm Sending Email Notifications from R
R-markdown-0.7.7-6-rosa2016.1.x86_64.rpm Markdown rendering for R
R-memoise-1.1.0-1-rosa2016.1.noarch.rpm Memoisation of Functions
R-mime-0.5-4-rosa2016.1.x86_64.rpm Map Filenames to MIME Types
R-nem-2.50.0-1-rosa2016.1.x86_64.rpm Reconstruct phenotypic hierarchies
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