R-nem-2.50.0-1-rosa2016.1.x86_64.rpm


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Description

R-nem - Reconstruct phenotypic hierarchies

Property Value
Distribution ROSA 2016.1
Repository ROSA Contrib Updates x86_64
Package name R-nem
Package version 2.50.0
Package release 1-rosa2016.1
Package architecture x86_64
Package type rpm
Installed size 4.41 MB
Download size 3.62 MB
Official Mirror mirror.rosalab.ru
The package 'nem' allows to reconstruct features of pathways from the
nested structure of perturbation effects. It takes as input (1.) a set of
pathway components, which were perturbed, and (2.) phenotypic readout of
these perturbations (e.g. gene expression, protein expression). The output
is a directed graph representing the phenotypic hierarchy.

Alternatives

Package Version Architecture Repository
R-nem-2.50.0-1-rosa2016.1.i586.rpm 2.50.0 i586 ROSA Contrib Updates
R-nem - - -

Requires

Name Value
R-RBGL -
R-RColorBrewer -
R-Rgraphviz -
R-boot -
R-e1071 -
R-grDevices -
R-graph -
R-graphics -
R-limma -
R-methods -
R-plotrix -
R-statmod -
R-stats -
R-utils -
libR.so()(64bit) -
libc.so.6()(64bit) -
libc.so.6(GLIBC_2.2.5)(64bit) -

Provides

Name Value
R-nem == 2.50.0-1:2016.1
nem.so()(64bit) -

Download

Type URL
Binary Package R-nem-2.50.0-1-rosa2016.1.x86_64.rpm
Source Package R-nem-2.50.0-1.src.rpm

Install Howto

  1. Enable ROSA Contrib Updates repository on Install and Remove Software
  2. Update packages list:
    # urpmi.update -a
  3. Install R-nem rpm package:
    # urpmi R-nem

Files

Path
/usr/lib64/R/library/nem/DESCRIPTION
/usr/lib64/R/library/nem/INDEX
/usr/lib64/R/library/nem/NAMESPACE
/usr/lib64/R/library/nem/Meta/Rd.rds
/usr/lib64/R/library/nem/Meta/data.rds
/usr/lib64/R/library/nem/Meta/hsearch.rds
/usr/lib64/R/library/nem/Meta/links.rds
/usr/lib64/R/library/nem/Meta/nsInfo.rds
/usr/lib64/R/library/nem/Meta/package.rds
/usr/lib64/R/library/nem/Meta/vignette.rds
/usr/lib64/R/library/nem/R/nem
/usr/lib64/R/library/nem/R/nem.rdb
/usr/lib64/R/library/nem/R/nem.rdx
/usr/lib64/R/library/nem/data/BoutrosRNAi2002.RData
/usr/lib64/R/library/nem/data/Ivanova2006RNAiTimeSeries.RData
/usr/lib64/R/library/nem/data/NiederbergerMediator2012.RData
/usr/lib64/R/library/nem/data/SahinRNAi2008.RData
/usr/lib64/R/library/nem/data/datalist
/usr/lib64/R/library/nem/doc/ModuleNetworks1.png
/usr/lib64/R/library/nem/doc/index.html
/usr/lib64/R/library/nem/doc/markowetz-thesis-2006.pdf
/usr/lib64/R/library/nem/doc/nem.R
/usr/lib64/R/library/nem/doc/nem.Rnw
/usr/lib64/R/library/nem/doc/nem.pdf
/usr/lib64/R/library/nem/doc/references.bib
/usr/lib64/R/library/nem/help/AnIndex
/usr/lib64/R/library/nem/help/aliases.rds
/usr/lib64/R/library/nem/help/nem.rdb
/usr/lib64/R/library/nem/help/nem.rdx
/usr/lib64/R/library/nem/help/paths.rds
/usr/lib64/R/library/nem/html/00Index.html
/usr/lib64/R/library/nem/html/BFSlevel.html
/usr/lib64/R/library/nem/html/BoutrosRNAi2002.html
/usr/lib64/R/library/nem/html/Ivanova2006RNAiTimeSeries.html
/usr/lib64/R/library/nem/html/NiederbergerMediator2012.html
/usr/lib64/R/library/nem/html/R.css
/usr/lib64/R/library/nem/html/SCCgraph.html
/usr/lib64/R/library/nem/html/SahinRNAi2008.html
/usr/lib64/R/library/nem/html/closest.transitive.greedy.html
/usr/lib64/R/library/nem/html/enumerate.models.html
/usr/lib64/R/library/nem/html/generateNetwork.html
/usr/lib64/R/library/nem/html/getDensityMatrix.html
/usr/lib64/R/library/nem/html/infer.edge.type.html
/usr/lib64/R/library/nem/html/internal.html
/usr/lib64/R/library/nem/html/local.model.prior.html
/usr/lib64/R/library/nem/html/nem.bootstrap.html
/usr/lib64/R/library/nem/html/nem.calcSignificance.html
/usr/lib64/R/library/nem/html/nem.consensus.html
/usr/lib64/R/library/nem/html/nem.cont.preprocess.html
/usr/lib64/R/library/nem/html/nem.discretize.html
/usr/lib64/R/library/nem/html/nem.html
/usr/lib64/R/library/nem/html/nem.jackknife.html
/usr/lib64/R/library/nem/html/nemModelSelection.html
/usr/lib64/R/library/nem/html/network.AIC.html
/usr/lib64/R/library/nem/html/plot.nem.html
/usr/lib64/R/library/nem/html/plotEffects.html
/usr/lib64/R/library/nem/html/prior.EgeneAttach.EB.html
/usr/lib64/R/library/nem/html/prune.graph.html
/usr/lib64/R/library/nem/html/quicknem.html
/usr/lib64/R/library/nem/html/selectEGenes.html
/usr/lib64/R/library/nem/html/set.default.parameters.html
/usr/lib64/R/library/nem/html/sim.intervention.html
/usr/lib64/R/library/nem/html/subsets.html
/usr/lib64/R/library/nem/html/transitive.closure.html
/usr/lib64/R/library/nem/html/transitive.projections.html
/usr/lib64/R/library/nem/html/transitive.reduction.html
/usr/lib64/R/library/nem/libs/nem.so

Changelog

2017-06-07 - Denis Silakov <denis.silakov@rosalab.ru> 2.50.0-1
- (5e5ea82) Disable check

See Also

Package Description
R-pkgmaker-0.27-2-rosa2016.1.noarch.rpm Development Utilities for R Packages
R-rBiopaxParser-2.16.0-1-rosa2016.1.x86_64.rpm Parses BioPax files and represents them in R
R-registry-0.5-1-rosa2016.1.x86_64.rpm Infrastructure for R Package Registries
R-rex-1.1.1-1-rosa2016.1.noarch.rpm Friendly Regular Expressions
R-rhdf5-2.20.0-1-rosa2016.1.x86_64.rpm HDF5 interface to R
R-rngtools-1.3.1-1-rosa2016.1.noarch.rpm Utility Functions for Working with Random Number Generators
R-rstudioapi-0.7-1-rosa2016.1.noarch.rpm Safely Access the RStudio API
R-rvest-0.3.2-1-rosa2016.1.noarch.rpm Easily Harvest (Scrape) Web Pages
R-selectr-0.3.1-2-rosa2016.1.noarch.rpm Translate CSS Selectors to XPath Expressions
R-sourcetools-0.1.7-1-rosa2016.1.x86_64.rpm Tools for Reading, Tokenizing and Parsing R Code
R-stringi-1.1.2-4-rosa2016.1.x86_64.rpm Character String Processing Facilities
R-synchronicity-1.3.4-1-rosa2016.1.x86_64.rpm Boost Mutex Functionality in R
R-testthat-1.0.2-5-rosa2016.1.x86_64.rpm Testthat code. Tools to make testing fun :)
R-uuid-0.1.2-1-rosa2016.1.x86_64.rpm Tools for generating and handling of UUIDs
R-xml2-1.1.1-2-rosa2016.1.x86_64.rpm Parse XML
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